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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_34619_PI390587928Hv_44K_v2CCTGTTCAAGTCTGCGAGTTTCAGTCAGTATAGTACCTGCTGTACTACTTTCCCAAAAAA420GeneList: brown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.9623.4531.2571.0500.1230.420
Raw 295.305587.401175.898255.3439.56737.189



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK251251.112613e-211131 - 118410054 / 54plus ABC01219 ABC01225 ABC01226 ABC01228 ABC01237 ABC01239 ABC01242 ABC19393 ABC49778
MLOCMLOC_38500.16793e-21114 - 16710054 / 54minus ABC01219 ABC01226 ABC01228 ABC01239 ABC49778
MLOCMLOC_38500.25233e-2167 - 12010054 / 54minus ABC01219 ABC01226 ABC01228 ABC01239 ABC49778
JLOC1JLOC1_25041.16752e-21404 - 45710054 / 54plus
Harvest21ABC012394913e-25421 - 48010060 / 60plusABC01239
Harvest21ABC0122619376e-221117 - 117010054 / 54plusABC01226
Harvest21ABC012187416e-22457 - 51010054 / 54plus
Harvest35U35_138754913e-25421 - 48010060 / 60plus
Harvest35U35_1383713286e-221132 - 118510054 / 54plus



Contig Sequence (491 bp)

>U35_13875 491 Hv_44K_v2
GCACGAGGGGCGCCGAGATCGTCGGCACGTTCGTGCTGGTGTACACCGTCTTCTCCGCCA
CCGACGCCAAGCGCAGCGCCAGAGACTCCCACGTCCCCATTTTGGCGCCGCTGCCGATCG
GGTTCGCGGTGTTCCTGGTGCACCTGGCGACGATCCCCATCACGGGCACCGGCGCGGCGC
TGGCGGCGATCTACCACGTGGTGGTGATCAGGGCGATCCCCTTCAAGAGCCGCGGCTAGT
GGACCAATCAGTCTGGGCGGCCATGGATGGAATCTTATCGCTGTTCATCGTCGACCGATC
ATGTGGTGGTGGTGGTGGTTGCTGGTGCGCGCGTACGTGGATCGTGTCTCGGCCGCGCAC
GCTGTAATAGTTCTCAAATCTGCCGTCTCTCCTCGGTGTGTGTGCCTGCCGGCAGCGTCG
CCTGTTCAAGTCTGCGAGTTTCAGTCAGTATAGTACCTGCTGTACTACTTTCCCAAAAAA
AAAAAAAAAAA



Homology of Contig U35_13875 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None