Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u20608	91.0	+	+	4944	-488	Containing

Transcripts from Gene HORVU3Hr1G050240

Transcript	Length(bp)	Description
HORVU3Hr1G050240.1	1372	gene=HORVU3Hr1G050240 CDS=182-922
HORVU3Hr1G050240.2	1459	gene=HORVU3Hr1G050240 CDS=182-1009
HORVU3Hr1G050240.3	798	gene=HORVU3Hr1G050240 CDS=3-791
HORVU3Hr1G050240.4	824	gene=HORVU3Hr1G050240 CDS=3-824
HORVU3Hr1G050240.5	798	gene=HORVU3Hr1G050240 CDS=1-798
HORVU3Hr1G050240.6	578	gene=HORVU3Hr1G050240 CDS=3-578
HORVU3Hr1G050240.7	591	gene=HORVU3Hr1G050240 CDS=3-590
HORVU3Hr1G050240.8	600	gene=HORVU3Hr1G050240 CDS=1-600

Exon Structure of HORVU3Hr1G050240

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os01g39790.1	+2	7e-142	409	203/273 (74%)	protein|esterase/lipase/thioesterase, putative, expressed
TAIR PP10	AT1G29840 @ ARAPORT AT1G29840.1 @ TAIR	+2	5e-99	298	143/247 (58%)	Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:10445735-10447422 REVERSE LENGTH=263
BRACH PP3	Bradi2g41780.1.p	+2	4e-161	457	222/267 (83%)	pacid=32782108 transcript=Bradi2g41780.1 locus=Bradi2g41780 ID=Bradi2g41780.1.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons