Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G050240.5

ChromosomeExonStartStopDirection
chr3H1358149679358149527+
chr3H2358149891358149809+
chr3H3358150386358150265+
chr3H4358152519358152355+
chr3H5358152688358152595+
chr3H6358153374358153224+
chr3H7358153522358153493+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os01g39790.1 +1 4e-140 395 190/241 (79%) protein|esterase/lipase/thioesterase, putative, expressed
TAIR PP10 AT1G29840 @ ARAPORT
AT1G29840.1 @ TAIR		 +1 8e-101 295 140/237 (59%) Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:10445735-10447422 REVERSE LENGTH=263
BRACH PP3 Bradi2g41780.1.p +1 2e-156 436 208/245 (85%) pacid=32782108 transcript=Bradi2g41780.1 locus=Bradi2g41780 ID=Bradi2g41780.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (798 bp)

>HORVU3Hr1G050240.5 798 150831_barley_pseudomolecules
ATCCAAACTGTTGACACCGTGTGGTTTCCTGAAACAGATGCTACACAGAGGGTATTGATA
ACGAACAAGCGTGGAGAGAAACTTGTGGGGCTACTGCATCCCACGGGTTTGAACAAGATT
GTAGTCTTGTGCCATGGCTTTACGGCCTCCAAGAGTTCTGGCATTATTGTTGATCTGGCA
GATGCAATAATAAAAAAAGGGATTAGTGTCTTTCACTTTGATTTCAGTGGAAACGGAGAG
AGCGAAGGCGAATTCCAGTATGGCAACTACAGGAAAGAGGCTGAAGACTTGCATTCTGTT
GTCTCATATCTGTATCAGGAGAAGTATGATGTAGCAGCTGTTGTTGGTCACAGCAAAGGA
GGAGATGTGGTTGTTCTTTATGCTTCCCTATATGACGATGTCCACATGGTTGTTAACCTA
TCTGGCCGATTTTATTTGGAGAAAGGCATTGAGGAACGCCTAGGGAAGGAATTTCTTGAC
AGAATAAATAAGGAAGGTTACATTGATGTCACAAACAAGTCAGGAAATATGTTATACAGG
GTAACAAAAGAGAGCTTGATGGAACGACTCAACACTGACATGCGTGCAACGAGCCTCTCC
ATTAGCAAGGAATGCAGCTTCTTCACAGTTCATGGTTCTGCTGATGACATCATTCCGGTG
GAAGATGCATATGAGTTTGCAAAGCATATACCAACCCACAAACTCTGTGTCGTCGAGGGA
GCAGATCACTGCTACACCAGACATCGTAAAGAACTTTCAGATGCTGTAGCCAGGGATACC
ACGCTAGAAGATCAATGA