Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G050240.4

ChromosomeExonStartStopDirection
chr3H1358149679358149525+
chr3H2358149891358149809+
chr3H3358150386358150265+
chr3H4358152519358152355+
chr3H5358152688358152595+
chr3H6358153398358153224+
chr3H7358153522358153493+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os01g39790.1 +3 4e-144 406 196/254 (77%) protein|esterase/lipase/thioesterase, putative, expressed
TAIR PP10 AT1G29840 @ ARAPORT
AT1G29840.1 @ TAIR		 +3 4e-102 298 143/247 (58%) Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:10445735-10447422 REVERSE LENGTH=263
BRACH PP3 Bradi2g41780.1.p +3 7e-163 453 217/259 (84%) pacid=32782108 transcript=Bradi2g41780.1 locus=Bradi2g41780 ID=Bradi2g41780.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (824 bp)

>HORVU3Hr1G050240.4 824 150831_barley_pseudomolecules
GAATCCAAACTGTTGACACCGTGTGGTTTCCTGAAACAGATGCTACACAGAGGGTATTGA
TAACGAACAAGCGTGGAGAGAAACTTGTGGGGCTACTGCATCCCACGGGTTTGAACAAGA
TTGTAGTCTTGTGCCATGGCTTTACGGCCTCCAAGAGTTCTGGCATTATTGTTGATCTGG
CAGATGCAATAATAAAAAAAGGGATTAGTGTCTTTCACTTTGATTTCAGTGGAAACGGAG
AGAGCGAAGGCGAATTCCAGTATGGCAACTACAGGAAAGAGGCTGAAGACTTGCATTCTG
TTGTCTCATATCTGTATCAGGAGAAGTATGATGTAGCAGCTGTTGTTGGTCACAGCAAAG
GAGGAGATGTGGTTGTTCTTTATGCTTCCCTATATGACGATGTCCACATGGTTGTTAACC
TATCTGGCCGATTTTATTTGGAGAAAGGCATTGAGGAACGCCTAGGGAAGGAATTTCTTG
ACAGAATAAATAAGGAAGGTTACATTGATGTCACAAACAAGTCAGGAAATATGTTATACA
GGGTAACAAAAGAGAGCTTGATGGAACGACTCAACACTGACATGCGTGCAACGAGCCTCT
CCATTAGCAAGGAATGCAGCTTCTTCACAGTTCATGGTTCTGCTGATGACATCATTCCGG
TGGAAGATGCATATGAGTTTGCAAAGCATATACCAACCCACAAACTCTGTGTCGTCGAGG
GAGCAGATCACTGCTACACCAGACATCGTAAAGAACTTTCAGATGCTGTAGTGGGTTTCA
TTACATCCAACAAGGCCAGGGATACCACGCTAGAAGATCAATGA