Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G050240.7

ChromosomeExonStartStopDirection
chr3H1358149982358149967+
chr3H2358150386358150265+
chr3H3358152519358152355+
chr3H4358152688358152595+
chr3H5358153398358153224+
chr3H6358153511358153493+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os01g39790.2 +3 2e-108 311 151/190 (79%) protein|esterase/lipase/thioesterase, putative, expressed
TAIR PP10 AT1G29840 @ ARAPORT
AT1G29840.1 @ TAIR		 +3 2e-73 222 106/183 (58%) Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:10445735-10447422 REVERSE LENGTH=263
BRACH PP3 Bradi2g41780.1.p +3 4e-122 347 166/191 (87%) pacid=32782108 transcript=Bradi2g41780.1 locus=Bradi2g41780 ID=Bradi2g41780.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (591 bp)

>HORVU3Hr1G050240.7 591 150831_barley_pseudomolecules
GCCTTTTCTGTAGGTTAGAGAGCGAAGGCGAATTCCAGTATGGCAACTACAGGAAAGAGG
CTGAAGACTTGCATTCTGTTGTCTCATATCTGTATCAGGAGAAGTATGATGTAGCAGCTG
TTGTTGGTCACAGCAAAGGAGGAGATGTGGTTGTTCTTTATGCTTCCCTATATGACGATG
TCCACATGGTTGTTAACCTATCTGGCCGATTTTATTTGGAGAAAGGCATTGAGGAACGCC
TAGGGAAGGAATTTCTTGACAGAATAAATAAGGAAGGTTACATTGATGTCACAAACAAGT
CAGGAAATATGTTATACAGGGTAACAAAAGAGAGCTTGATGGAACGACTCAACACTGACA
TGCGTGCAACGAGCCTCTCCATTAGCAAGGAATGCAGCTTCTTCACAGTTCATGGTTCTG
CTGATGACATCATTCCGGTGGAAGATGCATATGAGTTTGCAAAGCATATACCAACCCACA
AACTCTGTGTCGTCGAGGGAGCAGATCACTGCTACACCAGACATCGTAAAGAACTTTCAG
ATGCTGTAGTGGGTTTCATTACATCCAACAAGGCCAGGGATACCACGCTAG