- Transcript HORVU3Hr1G050240.8
- Transcript IDHORVU3Hr1G050240.8
- Gene IDHORVU3Hr1G050240
Exon Structure of HORVU3Hr1G050240.8
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr3H | 1 | 358150006 | 358149993 | + |
chr3H | 2 | 358150386 | 358150265 | + |
chr3H | 3 | 358152519 | 358152355 | + |
chr3H | 4 | 358152688 | 358152595 | + |
chr3H | 5 | 358153398 | 358153224 | + |
chr3H | 6 | 358153522 | 358153493 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os01g39790.2 | +1 | 2e-108 | 311 | 151/190 (79%) | protein|esterase/lipase/thioesterase, putative, expressed |
TAIR PP10 | AT1G29840 @ ARAPORT AT1G29840.1 @ TAIR |
+1 | 3e-73 | 222 | 106/183 (58%) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:10445735-10447422 REVERSE LENGTH=263 |
BRACH PP3 | Bradi2g41780.1.p | +1 | 2e-122 | 347 | 166/191 (87%) | pacid=32782108 transcript=Bradi2g41780.1 locus=Bradi2g41780 ID=Bradi2g41780.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (600 bp)
>HORVU3Hr1G050240.8 600 150831_barley_pseudomolecules CTGAATGAACTCAGAGAGAGCGAAGGCGAATTCCAGTATGGCAACTACAGGAAAGAGGCT GAAGACTTGCATTCTGTTGTCTCATATCTGTATCAGGAGAAGTATGATGTAGCAGCTGTT GTTGGTCACAGCAAAGGAGGAGATGTGGTTGTTCTTTATGCTTCCCTATATGACGATGTC CACATGGTTGTTAACCTATCTGGCCGATTTTATTTGGAGAAAGGCATTGAGGAACGCCTA GGGAAGGAATTTCTTGACAGAATAAATAAGGAAGGTTACATTGATGTCACAAACAAGTCA GGAAATATGTTATACAGGGTAACAAAAGAGAGCTTGATGGAACGACTCAACACTGACATG CGTGCAACGAGCCTCTCCATTAGCAAGGAATGCAGCTTCTTCACAGTTCATGGTTCTGCT GATGACATCATTCCGGTGGAAGATGCATATGAGTTTGCAAAGCATATACCAACCCACAAA CTCTGTGTCGTCGAGGGAGCAGATCACTGCTACACCAGACATCGTAAAGAACTTTCAGAT GCTGTAGTGGGTTTCATTACATCCAACAAGGCCAGGGATACCACGCTAGAAGATCAATGA