- Transcript HORVU3Hr1G050240.1
- Transcript IDHORVU3Hr1G050240.1
- Gene IDHORVU3Hr1G050240
Barley RTD
Exon Structure of HORVU3Hr1G050240.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 358149252 | 358149029 | + |
| chr3H | 2 | 358149679 | 358149564 | + |
| chr3H | 3 | 358149891 | 358149809 | + |
| chr3H | 4 | 358150386 | 358150265 | + |
| chr3H | 5 | 358152519 | 358152442 | + |
| chr3H | 6 | 358152688 | 358152595 | + |
| chr3H | 7 | 358153398 | 358153224 | + |
| chr3H | 8 | 358153972 | 358153493 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g39790.1 | +2 | 1e-116 | 344 | 178/273 (65%) | protein|esterase/lipase/thioesterase, putative, expressed |
| TAIR PP10 | AT1G29840 @ ARAPORT AT1G29840.1 @ TAIR |
+2 | 2e-79 | 247 | 126/247 (51%) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:10445735-10447422 REVERSE LENGTH=263 |
| BRACH PP3 | Bradi2g41780.1.p | +2 | 1e-133 | 387 | 195/267 (73%) | pacid=32782108 transcript=Bradi2g41780.1 locus=Bradi2g41780 ID=Bradi2g41780.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1372 bp)
>HORVU3Hr1G050240.1 1372 150831_barley_pseudomolecules GTAGCGCCTTCCTAGTGCGTTCTTTTCTTTGTACACCTTAAATTCCACGCCCTCCTCTGG CGTCCTCCACTTGCCCGGCGAATCTAACCTTCATCCTGCTGCTGCCACCGCCGGCGGGTC GACTAGACTCGGGTTCCTCCCACCCCAAACAGCACGAGGCTGCCGCCGCCATCTGTCTTC CATGTCACAGCCGCTCAATTCCTCCCGGCATGCTTCCAATCCCCATGCTACACAGAGGGT ATTGATAACGAACAAGCGTGGAGAGAAACTTGTGGGGCTACTGCATCCCACGGGTTTGAA CAAGATTGTAGTCTTGTGCCATGGCTTTACGGCCTCCAAGAGTTCTGGCATTATTGTTGA TCTGGCAGATGCAATAATAAAAAAAGGGATTAGTGTCTTTCACTTTGATTTCAGTGGAAA CGGAGAGAGCGAAGGCGAATTCCAGTATGGCAACTACAGGAAAGAGGCTGAAGACTTGCA TTCTGTTGTCTCATATCTGTATCAGGAGAAGTATGATGTAGCAGCTGTTGTTGGTCACAG CAAAGGCATTGAGGAACGCCTAGGGAAGGAATTTCTTGACAGAATAAATAAGGAAGGTTA CATTGATGTCACAAACAAGTCAGGAAATATGTTATACAGGGTAACAAAAGAGAGCTTGAT GGAACGACTCAACACTGACATGCGTGCAACGAGCCTCTCCATTAGCAAGGAATGCAGCTT CTTCACAGTTCATGGTTCTGCTGATGACATCATTCCGGTGGAAGATGCATATGAGTTTGC AAAGCATATACCAACCCACAAACTCTGTGTCGTCGAGGGAGCAGATCACTGCTACACCAG ACATCGTAAAGAACTTTCAGATGCTGTAGTGGGTTTCATTACATCCAACAAGGCCAGGGA TACCACGCTAGAAGATCAATGAATTCTGATGGATTTATGCTGTAGGATTTTGTACAGCAG TTCTCTTTACAGAAGCTCCCCTCAGAACAAGGCAATTCTAGATCATGGTCATTCTACTTC TTAGTTCCGGGATGTAATAAGCAATAAAGCATTGCAAGGCTTTAGGTTTGCGTTATTTTA TGGGGACTGCTATGCGTCGGTCCCTTCCAGTGGGATGCACATTTTTCTATTTTGCAACAA AGACCTTGTTGCAGAAACATTTATAACGGAGATTGTGTTGGAGAATTTTTATGTAACAGA GGTTGTGTTGCGATTTTTTTTTGCAAGAGAGACCGTGTTATAATTTTTTTGCAACATGAG TGTTGTTTTGGAAAAAAACACAAACGATGTTGCAGAAAATATTTGCAGTTTTTTTTTGKC AACGTAGGTGTTGTTGCGAAGAGCAAATTTGCAACACACGTGATGTTGGAGG