Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU3Hr1G050240	91.0	+	+	4944	-488	Containing

Transcripts from Gene BART1_0-u20608

Transcript	Length(bp)	Description
BART1_0-u20608.001	1845	1845 bp MSTRG.20608.1 MSTRG.20608
BART1_0-u20608.002	1947	1947 bp MSTRG.20608.2 MSTRG.20608
BART1_0-u20608.003	1344	1344 bp MSTRG.20608.3 MSTRG.20608
BART1_0-u20608.004	1320	1320 bp MSTRG.20608.4 MSTRG.20608

Exon Structure of BART1_0-u20608

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os01g39790.1	+2	1e-139	409	203/273 (74%)	protein|esterase/lipase/thioesterase, putative, expressed
TAIR PP10	AT1G29840 @ ARAPORT AT1G29840.1 @ TAIR	+2	5e-97	298	143/247 (58%)	Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:10445735-10447422 REVERSE LENGTH=263
BRACH PP3	Bradi2g41780.1.p	+2	9e-159	457	222/267 (83%)	pacid=32782108 transcript=Bradi2g41780.1 locus=Bradi2g41780 ID=Bradi2g41780.1.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0032051	clathrin light chain binding
GO:0006487	protein N-linked glycosylation
GO:0006886	intracellular protein transport
GO:0098796	membrane protein complex
GO:0003723	RNA binding
GO:0009506	plasmodesma
GO:0016192	vesicle-mediated transport
GO:0098657	import into cell
GO:0043231	intracellular membrane-bounded organelle
GO:0005829	cytosol
GO:1990904	ribonucleoprotein complex
GO:0030600	feruloyl esterase activity
GO:0043232	intracellular non-membrane-bounded organelle
GO:0044444	cytoplasmic part
GO:0005840	ribosome
GO:0031090	organelle membrane
GO:0044446	intracellular organelle part
GO:0005886	plasma membrane
GO:0006412	translation
GO:1990234	transferase complex
GO:0003735	structural constituent of ribosome
GO:0042175	nuclear outer membrane-endoplasmic reticulum membrane network
GO:0048475	coated membrane
GO:0016021	integral component of membrane
GO:0012505	endomembrane system
GO:0034998	oligosaccharyltransferase I complex

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons