Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G050240.6

ChromosomeExonStartStopDirection
chr3H1358149982358149967+
chr3H2358150386358150265+
chr3H3358152519358152355+
chr3H4358152757358152595+
chr3H5358152976358152865+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os01g39790.2 +3 9e-69 210 102/127 (80%) protein|esterase/lipase/thioesterase, putative, expressed
TAIR PP10 AT5G11910 @ ARAPORT
AT5G11910.2 @ TAIR		 +3 6e-46 150 70/126 (56%) Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:3836792-3838182 REVERSE LENGTH=216
BRACH PP3 Bradi2g41780.1.p +3 2e-76 231 111/126 (88%) pacid=32782108 transcript=Bradi2g41780.1 locus=Bradi2g41780 ID=Bradi2g41780.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (578 bp)

>HORVU3Hr1G050240.6 578 150831_barley_pseudomolecules
GCCTTTTCTGTAGGTTAGAGAGCGAAGGCGAATTCCAGTATGGCAACTACAGGAAAGAGG
CTGAAGACTTGCATTCTGTTGTCTCATATCTGTATCAGGAGAAGTATGATGTAGCAGCTG
TTGTTGGTCACAGCAAAGGAGGAGATGTGGTTGTTCTTTATGCTTCCCTATATGACGATG
TCCACATGGTTGTTAACCTATCTGGCCGATTTTATTTGGAGAAAGGCATTGAGGAACGCC
TAGGGAAGGAATTTCTTGACAGAATAAATAAGGAAGGTTACATTGATGTCACAAACAAGT
CAGGAAATATGTTATACAGGGTAACAAAAGAGAGCTTGATGGAACGACTCAACACTGACA
TGCGTGCAACGAGCCTCTCCATTAGCAAGGAATGCAGGTCAGGAAACTACTTGAGGAATG
AACTACCTTCATATTCCAACTACCAACTGAAACAAGGGGCACCATGTTGTAGTATCCGAA
CTCGCGTACCAACTCACACCACTCACACCCCCCACACACGCACCCCACTAGTACACAAGC
TCGACCTACAAACTACACACACTGCACGCTTGTTTTGA