barSeed - Barley Seed Development Database

Probe CUST_9745_PI390587928

Source Contig U35_364

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9745_PI390587928	Hv_44K_v2	CTGTCGACTATGTAATATGTATTCGAGTAATTAATGAGAAACATCTTTGCCACCGCAAAA	813	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64679.1	900	3e-22	845 - 900	100	56 / 56	plus	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726
JLOC1	JLOC1_42494.1	1145	4e-23	963 - 1019	100	57 / 57	plus
Harvest21	ABC00885	927	3e-25	814 - 873	100	60 / 60	plus
Harvest21	ABC00814	924	3e-25	762 - 821	100	60 / 60	plus
Harvest35	U35_364	947	3e-25	814 - 873	100	60 / 60	plus

Contig Sequence (947 bp)

>U35_364 947 Hv_44K_v2
GTCCCCCGGGCTGCAGGAATTCGGCACGAGGTGCCTCCTTCTAGCAAGCTATATACCTAC
ATAGTACAGCCATGGCCCCCACCGTGATGGCCTCATCGGCCACCTCCGTCGCTCCTTTCC
AGGGGCTCAAGTCCACCGCCGGCCTTCCCGTCAGCCGCCGCTCCAACGGCGCTAGCCTCG
GCAGCGTCAGCAACGGTGGAAGGATCAGGTGCATGCAGGTGTGGCCCATCGAGGGCATCA
AGAAGTTCGAGACCCTGTCTTACTTGCCACCACTCAGCACGGAGGCCCTCCTTAAGCAGG
TCGACTACCTGATCCGCTCCAAGTGGGTGCCTTGCCTCGAGTTCAGCAAGGTTGGGTTCA
TCTTCCGTGAGCACAACGCATCTCCTGGGTACTACGATGGCCGGTACTGGACAATGTGGA
AGCTGCCTATGTTCGGATGCACCGACGCCACACAGGTGCTCAACGAGGTGGAGGAGGTCA
AGAAGGAGTACCCTGACGCGTATGTCCGCATCATCGGATTCGACAACATGCGTCAGGTGC
AGTGCGTCAGCTTCATCGCCTTCAAGCCACCAGGCTGCGAGGAGTCCGGCAAGGCATAAA
CAGCTCACTGACGATGGGCCACATATAAAGTGCCATTGCAGTTTTGTCAACTCTGACATT
GCTTTGGGTTTTCCTTCTCCATTATCTTTCTTATTTGTTCCTAAAAATGTGTGTATGCCC
ATGTTCATGTACCAACATGGCTCGAGAAAGCATGCTCGTATGTGAATGCTATCGGTGGCT
ATGTATATGCACATGCACATAATATTATACAATCTGTCGACTATGTAATATGTATTCGAG
TAATTAATGAGAAACATCTTTGCCACCGCAAAAAAAAAAAAAAAAAAACACCTTTTATTT
CCGTCGCTAAAAAAAAAAAAAAAAGTTTATGTTGAATAATTGAGCAA

Homology of Contig U35_364 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g19470.2	176	5e-108	protein\|ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi4g08500.1	176	6e-117
Arabidopsis v10	AT1G67090.1	180	4e-79	\| Symbols: RBCS1A \| ribulose bisphosphate carboxylase small chain 1A \| chr1:25048465-25049249 REVERSE LENGTH=180