barSeed - Barley Seed Development Database

Probe CUST_7905_PI390587928

Source Contig U35_436

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7905_PI390587928	Hv_44K_v2	GTACTACCAATGATGTAAATTACAAGGATCCGTGCAAATGCATTGTTTGATTCATCGAAA	904	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56051.1	1187	2e-23	228 - 285	100	58 / 58	minus	ABC00006 ABC00418 ABC00422 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00837 ABC00841 ABC00944 ABC00949 ABC00951 ABC26767
JLOC1	JLOC1_36222.1	1178	1e-23	161 - 218	100	58 / 58	minus
Harvest21	ABC00418	958	3e-25	885 - 944	100	60 / 60	plus	ABC00418
Harvest35	U35_436	978	3e-25	905 - 964	100	60 / 60	plus

Contig Sequence (978 bp)

>U35_436 978 Hv_44K_v2
CCATCTCACACTCAAGCCTCTCTCTCTCTCTGAGATAACTCCGGTCTTAGCAGAGCAATG
GCGGCCACCACTATGTCCCTCTCCTCCTCAGCCTTTGCCGGCAAGGCAGTGAAGAATATG
GCATTGTCTGCTCTCTTTGGCGAGGCACGTGTCACTATGCGGAAGACTGCGGCAAAGGCA
AAACAAGTTGCTTCTAGCAGCCCATGGTACGGTGCTGATCGTGTGCTCTACCTCGGTCCG
CTATCAGGTGAGCCACCGAGCTACTTGACCGGCGAGTTCCCTGGTGACTATGGGTGGGAT
ACTGCCGGGCTCTCAGCTGACCCTGAGACCTTCGCCAAGAACCGTGAGCTGGAGGTGATC
CACTGTCGATGGGCTATGCTTGGTGCGCTTGGTTGTGTCTTCCCCGAGTTGCTCGCCCGC
AATGGCGTCAAGTTTGGTGAGGCTGTTTGGTTCAAGGCCGGCTCCCAAATCTTCAGCGAA
GGCGGCCTTGACTATCTCGGCAACCCCAGCCTCGTCCACGCGCAAAGCATCCTAGCCATT
TGGGCTTGCCAAGTTGTGCTCATGGGCGCCGTCGAGGGGTACCGCATTGCTGGTGGCCCA
CTTGGCGAGATTGTTGACCCACTTTACCCTGGAGGCAGCTTTGACCCACTTGGCTTAGCC
GAGGACCCCGAGGCATTCGCTGAGCTTAAGGTGAAGGAGATCAAGAACGGTCGTCTTGCT
ATGTTCTCCATGTTCGGCTTTTTCGTTCAAGCCATTGTCACCGGCAAGGGCCCACTCGAG
AATCTTGCTGACCATATTGCCGATCCAGTCAACAACAATGCATGGGCATTCGCCACTAAC
TTCGTGCCCGGCAAGTAAGGCACCCACTATGGTTGCACTTGCAAGCTGCGGGATGGTCTG
ATTTGTACTACCAATGATGTAAATTACAAGGATCCGTGCAAATGCATTGTTTGATTCATC
GAAAAAAAAAAAAAAAAA

Homology of Contig U35_436 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g52240.1	266	1e-170	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi4g07380.1	322	1e-178
Arabidopsis v10	AT2G34420.1	265	1e-158	\| Symbols: LHB1B2, LHCB1.5 \| photosystem II light harvesting complex gene B1B2 \| chr2:14522716-14523513 REVERSE LENGTH=265