barSeed - Barley Seed Development Database

Probe CUST_7895_PI390587928

Source Contig U35_446

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7895_PI390587928	Hv_44K_v2	GCATTTTGTTAAACATGTCTTCCGTAGATGGTTGAACATATGGCGCAAAAAGTTTATGTA	1019	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78528.2	1256	2e-24	4 - 63	100	60 / 60	minus	ABC00006 ABC00194 ABC00418 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC48253
MLOC	MLOC_78528.1	881	2e-24	4 - 63	100	60 / 60	minus	ABC00006 ABC00194 ABC00433 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC48253
JLOC1	JLOC1_52338.1	1242	8e-25	51 - 110	100	60 / 60	minus
Harvest21	ABC00944	1829	3e-25	768 - 827	100	60 / 60	minus	ABC00944
Harvest35	U35_28165	663	3e-25	536 - 595	100	60 / 60	plus
Harvest35	U35_446	1124	3e-25	1020 - 1079	100	60 / 60	plus

Contig Sequence (1124 bp)

>U35_446 1124 Hv_44K_v2
AAGCCATCTCCACACACATTCCTCACTCTTGAACACACAGAACCTCAATTGATCAGAATG
GCCGCAACGACCATGTCACTCTCTTCCCCAGCCTTTGCCGGCAAGGCAGTGAAGAACTTG
CCATCATCGTCTCTTTTTGGCGAGGCACGTGTCACCATGCGCAAGACGGCGGCAAAGGTC
AAGCAGGTTGCCTCCGGCAGCCCATGGTACGGCTCTGACCGTGTGCTCTACCTCGGTCCG
CTTTCTGGCGAGCCCCCGAGCTACCTCACCGGGGAGTTCCCTGGTGACTATGGCTGGGAC
ACTGCCGGGTTATCAGCTGACCCTGAGACCTTCGCCAAGAACCGTGAGCTGGAGGTGATT
CATTGTCGGTGGGCTATGCTTGGCGCACTCGGTTGTGTCTTCCCCGAGCTGCTTGCCCGC
AACGGTGTTAAGTTTGGTGAGGCTGTTTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAG
GGCGGCCTCGACTACCTTGGCAACCCAAGCCTCGTGCACGCGCAAAGCATCCTTGCCATC
TGGGCGTGTCAGGTCGTGCTCATGGGCGCCGTCGAGGGTTACCGCATTGCCGGAGGACCA
CTTGGTGAGATTGTTGACCCGCTCTACCCAGGCGGCAGCTTCGACCCGCTCGGTCTTGCC
GACGACCCCGAGGCATTTGCTGAGCTCAAGGTTAAGGAGATCAAGAACGGTCGCCTCGCC
ATGTTCTCCATGTTCGGTTTCTTTGTGCAAGCCATTGTCACTGGCAAGGGTCCACTTGAG
AACCTCGCCGACCACCTCTCCGACCCTGTCAACAACAATGCTTGGGCATTCGCCACCAAC
TTTGTTCCTGGGAAATAAGCTGTCCTAGAGACTATGCTCGCGGTGAAGTGTGCCCTCGTG
CAGTCTAATTTGTACTATCAGATTGTAAATTACAAGGATTTTGTGCAAAAGCATTACAAG
ATTTGCCCGCCTTCGAAAAAAAAAAAAAAAACGATATAGACATTTGGTGTGATCATTTCG
CATTTTGTTAAACATGTCTTCCGTAGATGGTTGAACATATGGCGCAAAAAGTTTATGTAA
ATATTTACCTAAGAATCAACATGCATAACCAAAAGTTGAATACT

Homology of Contig U35_446 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g52240.1	266	9e-177	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi4g07380.1	322	0.0
Arabidopsis v10	AT2G34420.1	265	5e-167	\| Symbols: LHB1B2, LHCB1.5 \| photosystem II light harvesting complex gene B1B2 \| chr2:14522716-14523513 REVERSE LENGTH=265