barSeed - Barley Seed Development Database

Probe CUST_7894_PI390587928

Source Contig U35_447

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7894_PI390587928	Hv_44K_v2	TCTCTGGAGAAGCATTGTTAGATTTGGCATCTAGCAATTTGTTGGGATTATCAGAAAAAA	1015	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358669	1024	2e-24	941 - 1000	100	60 / 60	plus	ABC00189 ABC00418 ABC00422 ABC00432 ABC00433 ABC00617 ABC00628 ABC00841 ABC00926 ABC26749 ABC32758 ABC53022
MLOC	MLOC_9033.1	1159	2e-24	572 - 631	100	60 / 60	minus	ABC00189 ABC00418 ABC00422 ABC00425 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00841 ABC26749 ABC26767 ABC32758 ABC53022
JLOC1	JLOC1_5941.1	921	8e-25	241 - 300	100	60 / 60	minus
Harvest35	U35_447	1086	3e-25	1016 - 1075	100	60 / 60	plus
Harvest35	U35_392	1020	5e-23	940 - 998	98	59 / 60	plus

Contig Sequence (1086 bp)

>U35_447 1086 Hv_44K_v2
TAGAGCGGACGTTCCTTTTAGAAGAGCAGAATCCAAATATAGTGTTGAACAAGTAGGCGT
AACGGTGGAGTTCTATGGTGGCGAACTATCTCCACACTCACTCATCTCCTTGAGAACCCA
TATAGCAGACACTTCGCTTAGCTTTCCAATGGCGGCAGCCACCATGTCCATCTCCTTGAC
CTTTGCCGGCAAGACGGTGAAGAACGTACCATCTTTGGTTCTCTTTGGCGAAGCCCGAGT
CACCATGCGCAAGACCGGAGCAAAGGCAAAGCAAGTTTCCTCCGGCAGCCCATGGTACGG
TGCCGACCGTGTGCTCTACCTCGGCCCACTCTCCGGTGAGCCCCCGAGCTACCTCACCGG
TGAGTTCCCAGGCGACTATGGGTGGGACACTGCCGGACTTTCAGCTGACCCTGAGACCTT
CGCCAAGAACCGGGAGCTGGAGGTGATCCATTGTCGATGGGCCATGCTCGGAGCACTTGG
TTGTGTCTTTCCTGAGTTGCTCGCTCGCAACGGCGTCAAGTTCGGTGAGGCTGTTTGGTT
CAAGGCCGGTTCCCAGATCTTTAGTGAGGGTGGTCTCGACTACCTTGGCAACCCAAGCCT
CGTCCACGCACAAAGTATCCTAGCTATTTGGGCATGCCAGGTGGTGCTCATGGGTGCCGT
CGAGGGGTACCGTGTTGCAGGCGGCCCACTCGGTGAGATCGTCGACCCACTCTACCCGGG
CGGAAGCTTTGACCCACTCGGTCTGGCTGATGACCCCGAGGCATTCGCCGAGCTTAAGGT
GAAGGAGATCAAGAACGGCCGCCTTGCCATGTTCTCAATGTTTGGCTTCTTTGTCCAGGC
CATAGTCACCGGCAAGGGCCCACTCGAGAACCTTGGTGACCACATCACCGACCCTGTCAA
CAACAACGCCTGGGCATTTGCCACCAACTTCGTCCCCGGCAAATAAGGTGTTCTGGAGCT
GCTCACAGTGAAGTGTGAGGTTGTGTGGTTTGATTTGTACTACCATGATGTAAATTCTCT
GGAGAAGCATTGTTAGATTTGGCATCTAGCAATTTGTTGGGATTATCAGAAAAAAAAAAA
AAAAAA

Homology of Contig U35_447 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g52240.1	266	8e-172	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi4g07380.1	322	0.0
Arabidopsis v10	AT2G34420.1	265	1e-160	\| Symbols: LHB1B2, LHCB1.5 \| photosystem II light harvesting complex gene B1B2 \| chr2:14522716-14523513 REVERSE LENGTH=265