barSeed - Barley Seed Development Database

Probe CUST_39489_PI390587928

Source Contig U35_13936

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39489_PI390587928	Hv_44K_v2	TTGGATCTTGTATGTAGCGCCTGGTCTGGAGTTGCAGGCTGTAGTGTTGTGGCCCTGTCA	538	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369442	685	2e-24	548 - 607	100	60 / 60	plus	ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00671 ABC00709 ABC00869 ABC34584 ABC44597
MLOC	MLOC_36806.1	354	2e-24	194 - 253	100	60 / 60	minus	ABC00440
JLOC1	JLOC1_23748.1	344	8e-25	184 - 243	100	60 / 60	minus
Harvest21	ABC49773	428	3e-25	46 - 105	100	60 / 60	minus
Harvest21	ABC00440	698	3e-25	537 - 596	100	60 / 60	plus	ABC00440
Harvest35	U35_13936	598	3e-25	539 - 598	100	60 / 60	plus

Contig Sequence (598 bp)

>U35_13936 598 Hv_44K_v2
GCCGCAAACGCCACACCTCGAGACAGTCCTCGTCGCCGGAGAAGCAGCAAGCAAGGGGAT
GGCCGGAAGGAAGGGAGGCGACAGGAAGAAGGCGGTGACCCGGTCCGTGAAGGCCGGGCT
CCAGTTCCCCGTCGGCCGCATCGGGCGCTACCTCAAGAAGGGCCGCTACGCCCAGCGCGT
CGGCTCCGGCGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCCGAGGTGCT
TGAGCTCGCCGGCAACGCGGCCAAGGACAACAAGAAGACCCGCATCATCCCGCGGCACCT
ACTTCTCGCCGTCCGCAACGACCAGGAGCTCGGCAGGCTGCTCGCGGGCGTCACCATCGC
CCACGGCGGCGTGATCCCCAACATCAACTCCGTGCTGCTCCCCAAGAAGTCCGCCGCCGC
CGCCGAGAAGGAGGCCACCAAGTCGCCCAAGAAGAAGGCCGCCACCAAGTCCCCCAAGAA
GAAGACCGCCGCCAAGGAGTAGACGCCGCCAAGGAGTAGTGTCGTGCTGCCTAGTTAGTT
GGATCTTGTATGTAGCGCCTGGTCTGGAGTTGCAGGCTGTAGTGTTGTGGCCCTGTCA

Homology of Contig U35_13936 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g17100.1	160	9e-52	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g37327.1	160	4e-52
Arabidopsis v10	None