barSeed - Barley Seed Development Database

Probe CUST_35629_PI390587928

Source Contig U35_26913

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35629_PI390587928	Hv_44K_v2	GTACTACCATGATGTAAATTACGAGAATTTTGTGCAAAAGCAATGCAAGATTTTTCCTGC	512	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248894.1	957	2e-24	894 - 953	100	60 / 60	plus	ABC00006 ABC00347 ABC00433 ABC00628 ABC00837 ABC00841 ABC00949 ABC00960 ABC25177 ABC26749 ABC26767 ABC32758 ABC53022
Harvest21	ABC25177	588	3e-25	17 - 76	100	60 / 60	minus	ABC25177
Harvest35	U35_26913	588	3e-25	513 - 572	100	60 / 60	plus

Contig Sequence (588 bp)

>U35_26913 588 Hv_44K_v2
GAGGCTGAGTTGCTCGCCCGCAATGGTGTCAAGTTCGTCGAGGCCGTTTGGTTCAAGAAC
GGCTCCCAAATATTTAGTGATGGTGGTCTCGACTACCTAGGCAACCCCAGCCTTGTGCAT
GCACAAAGCATCCTAGCTATTTGGGCATGCCAGGTCGTGCTCATGGGTGCCGTCGAGGGG
TACCGCGTTGCTGGTGGCCCACTCGGCGGGATCGCCGACCCACTATACCCTTTTTTTTTC
TTCGACCCTCTCGGCCTAGCCGACGACCCCGAGGCATGCTCTGAGCTCAAGGTGAAGGAG
ATCAAAAACGGTCGCCTTGCTATGTTCTCAATGTTCGGCTTCTTTGTCCAAGCTATCGTC
ACGGGCAAGGGCCCTCTTGAGAACCTCGCTGACCACATCGCTGATCCCGTCAACAACAAT
GCTTGGGCTTTCGCCACCAACTTTGTCCCCGGCAAGTAGGATGTCTTGAAGGTTGTGCAC
AACGCGAAGCGTATTGTTGTGCACTCTGAGTTGTACTACCATGATGTAAATTACGAGAAT
TTTGTGCAAAAGCAATGCAAGATTTTTCCTGCTAAAAAAAAAAAAAAA

Homology of Contig U35_26913 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g52240.1	266	1e-93	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi2g16290.1	264	2e-95
Arabidopsis v10	AT2G34420.1	265	1e-88	\| Symbols: LHB1B2, LHCB1.5 \| photosystem II light harvesting complex gene B1B2 \| chr2:14522716-14523513 REVERSE LENGTH=265