barSeed - Barley Seed Development Database

Probe CUST_18870_PI390587928

Source Contig U35_42346

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18870_PI390587928	Hv_44K_v2	CATTATGTGAGTATACTGTTTTATATGACGAGTGGGAGAGCTAAGTGCTAGTAGTACTTG	583	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1753.1	3578	2e-24	1154 - 1213	100	60 / 60	plus	ABC05172 ABC12127 ABC12128 ABC30081 ABC34978 ABC34989 ABC44562 ABC46334 ABC49963
MLOC	MLOC_1753.3	1800	2e-24	859 - 918	100	60 / 60	plus	None
MLOC	MLOC_51863.1	602	7e-23	423 - 482	98	59 / 60	plus	None
JLOC1	JLOC1_1067.3	1881	8e-25	865 - 924	100	60 / 60	plus
Harvest21	ABC37971	646	3e-25	584 - 643	100	60 / 60	plus
Harvest35	U35_42346	646	3e-25	584 - 643	100	60 / 60	plus

Contig Sequence (646 bp)

>U35_42346 646 Hv_44K_v2
GGCCGGCCTGGCACTAATATTCATATTCTTTTGTTTCAGTTTTATCCCTTAGTTTATGAA
CTGTTCTTGTGCTATACTTAATTTTTTTGTGCTCAGATGTCATCTAAAAAACAATTGTCT
CGGCATGAAAAGTGACTAAAGAGAAAGCTAGCAAATGAAAAATTGGAACCGCAAAAGGGA
TATGTTCACAAATTTCGAAGCCAAGTGCAAGTTCTGCTAGTACTTCTTGTGAACTAGCTA
TAACAATTGTTGAAAAACAACCAGATGAAACTTTAGATGAGAACGATAATAACGTTAGTG
GTCAAGAAAATTTAGGCGAGGGTAATAATGCTGCGAGTGAACCTGACAATTTAGGCAAGG
GTACCGATGCTGTGAATGATAATAACATGAGCGATTCTGTGACAGCACAACAGCCTTGTG
CTTGAAATATTTATGATCCAGCAAATTGGGAATGTTTAGATGATAAAGCACGGGCTATTT
TAGTTGAAAAGGGACCTATCGGAGAAGAAAACCTCGTATCTCGTTCAGATGATTCTTTTA
TTTTTTATAAGCAATTGCTTCTATTTTTTATGTACACATGCCCCATTATGTGAGTATACT
GTTTTATATGACGAGTGGGAGAGCTAAGTGCTAGTAGTACTTGCGA

Homology of Contig U35_42346 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None