barSeed - Barley Seed Development Database

Probe ABC17988

Source Contig ABC17988

barSeed

Links

Affymetrix Source Sequence (1396 bp)

>ABC17988 1396
GGTTGTTGAGTGATGAACCAGAGAGTGGAGGTTTGCTTTACTGTTCATGGTCATTGTTAT
GGCTCAGGGCCTTGTATGATATAAGATAGCATCTTGTGTGCTGAAGTTTGTGTTTTGGAT
TGAAGTTGGATTGAATCGTTAACCATGGGATGGGGACCAGAGAATTTGGGAACTATGTTT
TGATAATTGATCCTCAATTTAGCTTCTTTGTTTGCAGTCAAATTAAGCTTAAAGCATCTC
TGATATTGACTGTTGGTTCTCCAGCTATTGGACTTATGGGACTTTCTGGAAGGTGCCTTG
TTTTGACTGTTGGTTTACAGGGGGTTTCTTCTGTTGACTTCATCTTTCCTGATTTGCTTT
GAACATTGTACTTCCAAGACATGATTTTCTCTGCCCTTGGTAATCATGTGCCCTTGCAGA
CATTGACATGGATGAGAGATAATATAGTTCGCTATCTGGAAGACTGGGACTGGCGTTGTT
GCCTAACTAGCCAAGCAATCTTATCCTATCCCCTCACTGTTTGATGCATCATTTAGCTGT
TTATAGGCAGCATCATTTCCCCAAAGCAAAAGTTGAAACAAAGGTTTCTTGGTCCACTGC
AGGTCCTAACTGACGATTTAGGTCCAACATGATGATGAATATGTTTGAAGATCTTCTAAA
CCCTGCACCTTTCCAATTCATCATAATTTTTTCAACATATAATTTATCTTACAGAGACAA
AATTTAAACATTCAGATTGATTTGGTGGATGTACAAGGTTCGAAGGTTGCTCTGGAGCAT
CAATCTAGACGGGGCATCCTACAACTGAAAAAACCCAGTGCTCTCTATTTTGATCTATTG
AAGAAGCTTCTGTTGTCTTAGCTGCTAGCATTGATTGTGGTTTCTTGCTTCCTCCTTCTT
GTGGTTGCAGATTGTTTAGCCCAAGCCATGCTGGTAGCCATCAAAAGCTGTCGTATTTTT
GGCTTGTGATCCTCTCCTGACTTATATTTGGGTAATGTGGATGGCTTGATATGCAAAAAG
AGGTTAGGGATTAACGCTTTATACCAAAACAATGGAGAGTTGAAGCTTCTCAACTGGAAG
CTTGAACAAACAAATTGCCATGGACACTCTACTCCTCATCATGTCTTTGATTAGTGTCAT
TTCCACTGAATATGATTCCGATTTGTTGGTATAGAATTGATTTTCAGAAGTGATGTTCTT
CTGGTGGTTCTCCAGTGGGATCCGGATACGAATCTTCAGTGCATCTTCTCGGTTTGCTGC
GGAACTTCCTATTTTAATTTGGCAACTTGTAAAATAAGTCTGGCTAAATTTGATGACTAC
TGCTGATTGTATACTTTTCAACTCAAGTAGCTTGTACATGTCAGTTTCATTCATGCTGGA
TATTCTCATTCAGGTT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK248174.1	5646	0.0	4186 - 5579	87	1231 / 1417	CUST_31689_PI390587928 CUST_20599_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC38921 ABC47338
MLOC_80643.3	4085	0.0	1036 - 2429	87	1231 / 1417	CUST_31690_PI390587928 CUST_31689_PI390587928 CUST_40368_PI390587928	ABC07668 ABC07669 ABC17988 ABC29282 ABC47338
MLOC_46653.1	994	0.0	1 - 699	97	677 / 700	None	ABC07668 ABC07669 ABC17988
MLOC_10162.1	1754	0.0	1 - 1117	85	974 / 1144	None	ABC07668 ABC07669 ABC17988 ABC47338
MLOC_76644.4	3775	1e-158	2063 - 2533	89	419 / 473	CUST_31690_PI390587928 CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC29282 ABC47338
MLOC_76644.1	2856	1e-158	2064 - 2534	89	419 / 473	CUST_31689_PI390587928 CUST_31690_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC29282 ABC47338
MLOC_80643.7	1788	0.0	893 - 1786	87	791 / 913	CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988
MLOC_80643.2	1873	0.0	1036 - 1850	87	721 / 833	None	ABC07668 ABC07669 ABC17988
AK250402.1	6765	0.0	4174 - 5170	82	835 / 1020	CUST_18617_PI390587928 CUST_25328_PI390587928 CUST_13551_PI390587928	ABC07669 ABC17988 ABC20754 ABC34305 ABC38921
MLOC_67568.1	8628	0.0	3320 - 4316	82	835 / 1020	CUST_13551_PI390587928 CUST_13376_PI390587928 CUST_25328_PI390587928 CUST_18617_PI390587928	ABC07669 ABC17988 ABC20754 ABC30471 ABC34305 ABC38921
MLOC_67568.4	6839	0.0	1759 - 2755	82	835 / 1020	CUST_25328_PI390587928 CUST_18617_PI390587928 CUST_13551_PI390587928	ABC07669 ABC17988 ABC20754 ABC34305 ABC38921
MLOC_67568.5	5944	0.0	708 - 1704	82	835 / 1020	CUST_13551_PI390587928	ABC07669 ABC17988 ABC20754 ABC38921
MLOC_67568.2	8046	0.0	2726 - 3722	82	835 / 1020	CUST_13551_PI390587928 CUST_13376_PI390587928 CUST_25328_PI390587928 CUST_18617_PI390587928	ABC07669 ABC17988 ABC20754 ABC30471 ABC34305 ABC38921
MLOC_67568.3	8388	0.0	3229 - 4225	82	835 / 1020	CUST_13376_PI390587928 CUST_13551_PI390587928 CUST_18617_PI390587928 CUST_25328_PI390587928	ABC07669 ABC17988 ABC20754 ABC30471 ABC34305 ABC38921
MLOC_52476.1	457	0.0	1 - 453	98	443 / 453	None	ABC07668 ABC17988 ABC47338
MLOC_76643.1	2474	1e-158	760 - 1230	89	419 / 473	CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC47338
MLOC_80643.6	3493	0.0	1035 - 1672	86	562 / 655	CUST_31690_PI390587928 CUST_31689_PI390587928 CUST_40368_PI390587928	ABC07668 ABC07669 ABC17988 ABC29282 ABC47338
MLOC_76644.2	3575	4e-59	1723 - 1946	86	195 / 228	CUST_31689_PI390587928 CUST_31690_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC29282 ABC47338
MLOC_76644.3	3570	1e-158	1861 - 2331	89	419 / 473	CUST_31689_PI390587928 CUST_31690_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC29282 ABC47338
MLOC_76644.5	3679	4e-59	1722 - 1945	86	195 / 228	CUST_31689_PI390587928 CUST_31690_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC29282 ABC47338
MLOC_76644.6	1927	0.0	57 - 703	87	572 / 659	CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC47338
MLOC_80643.4	1707	0.0	881 - 1518	86	562 / 655	CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988
MLOC_34603.1	358	0.0	1 - 358	99	355 / 358	None	ABC07669 ABC17988
MLOC_40046.2	3024	2e-166	2685 - 3024	98	334 / 341	None	ABC17988 ABC20754
MLOC_40046.3	3787	2e-166	3448 - 3787	98	334 / 341	None	ABC17988 ABC20754
MLOC_19951.2	2117	1e-163	1 - 381	94	363 / 386	CUST_1951_PI390587928	ABC07668 ABC17988 ABC47338
MLOC_19951.1	2110	1e-163	1 - 381	94	363 / 386	CUST_1951_PI390587928	ABC07668 ABC17988 ABC47338
MLOC_19951.3	2419	1e-163	1 - 381	94	363 / 386	CUST_1951_PI390587928	ABC07668 ABC17988 ABC47338
MLOC_19951.4	1990	5e-163	1 - 380	94	362 / 385	CUST_1951_PI390587928	ABC07668 ABC17988 ABC47338
MLOC_76643.2	2089	1e-158	381 - 851	89	419 / 473	CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754
MLOC_19950.1	811	6e-157	1 - 369	94	351 / 374	CUST_1951_PI390587928	ABC07668 ABC17988 ABC47338
MLOC_25948.1	308	5e-153	2 - 308	99	303 / 307	None	ABC17988
MLOC_27385.1	301	6e-147	1 - 301	98	295 / 301	None	ABC17988
MLOC_80643.8	1795	6e-137	853 - 1312	86	408 / 473	CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988
MLOC_80643.1	1609	6e-137	1036 - 1495	86	408 / 473	None	ABC07669 ABC17988
MLOC_40046.4	3554	3e-135	3272 - 3552	98	276 / 282	None	ABC17988 ABC20754
MLOC_42428.1	290	2e-127	25 - 290	98	261 / 267	None	ABC17988
MLOC_67566.1	6862	5e-123	3161 - 3664	83	423 / 508	CUST_13376_PI390587928 CUST_25328_PI390587928	ABC07669 ABC17988 ABC20754 ABC30471 ABC34305 ABC38921
MLOC_58075.1	404	3e-115	133 - 404	95	258 / 273	CUST_31688_PI390587928	ABC17988
MLOC_46654.1	313	2e-107	1 - 215	99	214 / 215	None	ABC17988
MLOC_42779.1	227	2e-102	1 - 227	96	219 / 227	None	ABC07668 ABC07669 ABC17988
MLOC_42444.1	198	5e-93	1 - 198	98	194 / 198	None	ABC17988 ABC47338
MLOC_80643.5	1713	4e-59	1205 - 1422	86	191 / 222	CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988