barSeed - Barley Seed Development Database

Probe ABC07668

Source Contig ABC07668

barSeed

Links

Affymetrix Source Sequence (828 bp)

>ABC07668 828
CTGATATCTCCCAGCCAAGCAGGCTTATCCTATCCCCTCAATGTTTGATGCATCATTTAG
CTGTTCATAGGCAGCTTCGTTTCCCCAAAGCAGAAGTTGAAACGAAGGTTTCTTGGTCAT
TGCAGGTCCTAACTGACGATTTAGGTCCAACCTGATGATGAATTGAATTGCTGGATGTAG
AAGGTTTGAAGGTTGCTACAGGGCATCAATCTAGACGGACCATCCTACAGCCGAAAAAAC
CCAGTGCTCTCTATTTGATCTCTTGAAGAAGCTTCTGTTGTCTTAGCTGCCTTGTGCTTG
TAGCATTGATTGTGTTTTTTTGCCTCCGCCTTCTTGTGGTTGCAGATTGTTTAGCCCAAG
CTATGCTGGTAGCCATCAAAATATGTCGCATTTTTGGTTTCTGATCCTCTCCTGACTTCT
ATAGTTGGGTAATGTTGATGGCTTGATACGCAGAAAGAGGTTAGGGATTATCGCTATATA
TACTAAAAACAATGGAGAGTTGAAGCTTCTCGACTCGAAGCTTGAACAAACAGTTTGGCA
TGGACACTACTACTCATCATGTCTTTGATTAGTGTCATTTCCACTGAATATGATTCCGAT
GATCCCGACTTATTGGTATGGAATTGATTTTCAGAAGTGATGTTCTTACCATTGGTGGTT
CTCCAGTGGGATCTGGATTACGAATCTTCAATGCATCTTCTTGGTTTGCTGGGGAACTTC
CTATTTTAATTTGACAACTTTGTAAAATAGTTGGGCTAAGTTTGATGGTTTTACTGCTGA
TTGTATACTTTCAACTCAAGTAGCTTGTACACAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_80643.6	3493	0.0	1510 - 2320	100	811 / 811	CUST_31690_PI390587928 CUST_31689_PI390587928 CUST_40368_PI390587928	ABC07668 ABC07669 ABC17988 ABC29282 ABC47338
MLOC_76644.2	3575	0.0	1095 - 1885	97	767 / 794	CUST_31689_PI390587928 CUST_31690_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC29282 ABC47338
MLOC_76644.5	3679	0.0	1094 - 1884	97	767 / 794	CUST_31690_PI390587928 CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC29282 ABC47338
AK248174.1	5646	2e-79	4661 - 4821	100	161 / 161	CUST_20599_PI390587928 CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC38921 ABC47338
MLOC_80643.3	4085	2e-79	1511 - 1671	100	161 / 161	CUST_40368_PI390587928 CUST_31690_PI390587928 CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988 ABC29282 ABC47338
MLOC_76644.3	3570	0.0	1095 - 1760	97	646 / 669	CUST_31690_PI390587928 CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC29282 ABC47338
MLOC_76644.6	1927	0.0	80 - 745	97	646 / 669	CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC47338
MLOC_76644.4	3775	1e-72	1820 - 1980	98	157 / 161	CUST_31690_PI390587928 CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC29282 ABC47338
MLOC_76644.1	2856	1e-72	1821 - 1981	98	157 / 161	CUST_31689_PI390587928 CUST_31690_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC29282 ABC47338
MLOC_76643.1	2474	0.0	1 - 527	97	510 / 528	CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC47338
MLOC_80643.5	1713	0.0	1260 - 1713	100	454 / 454	CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988
MLOC_80643.8	1795	1e-152	1503 - 1795	100	293 / 293	CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988
MLOC_80643.7	1788	2e-79	1238 - 1398	100	161 / 161	CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988
MLOC_52476.1	457	4e-127	1 - 415	86	378 / 437	None	ABC07668 ABC17988 ABC47338
MLOC_76643.2	2089	1e-126	1 - 280	96	269 / 280	CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754
MLOC_80643.4	1707	6e-125	1356 - 1598	100	243 / 243	CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988
MLOC_10162.1	1754	3e-118	1 - 389	87	341 / 393	None	ABC07668 ABC07669 ABC17988 ABC47338
MLOC_19951.2	2117	3e-93	1 - 341	85	311 / 366	CUST_1951_PI390587928	ABC07668 ABC17988 ABC47338
MLOC_19951.1	2110	3e-93	1 - 341	85	311 / 366	CUST_1951_PI390587928	ABC07668 ABC17988 ABC47338
MLOC_19951.3	2419	3e-93	1 - 341	85	311 / 366	CUST_1951_PI390587928	ABC07668 ABC17988 ABC47338
MLOC_19951.4	1990	1e-92	4 - 340	85	308 / 362	CUST_1951_PI390587928	ABC07668 ABC17988 ABC47338
MLOC_19950.1	811	3e-88	1 - 329	85	300 / 354	CUST_1951_PI390587928	ABC07668 ABC17988 ABC47338
MLOC_80643.2	1873	2e-79	1511 - 1671	100	161 / 161	None	ABC07668 ABC07669 ABC17988
MLOC_46653.1	994	9e-59	178 - 329	94	143 / 152	None	ABC07668 ABC07669 ABC17988
MLOC_42779.1	227	2e-56	77 - 227	93	141 / 151	None	ABC07668 ABC07669 ABC17988