barSeed - Barley Seed Development Database

Probe ABC38921

Source Contig ABC38921

barSeed

Links

Affymetrix Source Sequence (563 bp)

>ABC38921 563
CGGATGGGATCTGATATGTGGAGATCACTATGATGGTGTATGTTCAAGGGGATTTTAGGT
AGGTCAGATAACATGCCTATTGCCCGTGTGGTCTTCTAGTTCTCATCACGAGTTCCATCA
TAATCAATATAAGGTGGATTAGAGGTATTGGTGGATTCTTATTGTAGCAGTTGATCTCGC
TTTTGGTTTGTGTTTGTGCTCCTTCAGATGCAGCAGAAGCAGGAAGTGGTTCCGCATAGA
TGAACCGAAAGGATGGTGGTTTGGTTTCATATGGTCAGAGGTCTCCAGGGATGATGTTTG
GTGTTGGACTGAAGTTTTGGATCGCACATCAACCTGGAACTTGAGATCCGTGTTCAGATG
ATCCTCTGAATTTCACTTCATTTCATTTGGATTCGTTCAGTTCTAGCCTAACTTTAATTT
GGATTCATTGCTCGTTGTCACAAATTGAGATTACTCGGCTTAGTGGGAGCGGCGTACTAT
CTTCTTGCTGACCGACCTGTGTTTGGATGATCAAAATTCTGTTCAATTTGTTCTTCTCCA
CGGTTCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK248174.1	5646	0.0	1964 - 2511	100	548 / 548	CUST_20599_PI390587928 CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC38921 ABC47338
MLOC_51579.2	884	0.0	1 - 482	100	482 / 482	None	ABC20754 ABC38921
MLOC_26555.1	1030	0.0	114 - 662	96	529 / 552	CUST_20599_PI390587928	ABC20754 ABC38921
AK250402.1	6765	5e-159	2044 - 2525	88	434 / 493	CUST_13551_PI390587928 CUST_25328_PI390587928 CUST_18617_PI390587928	ABC07669 ABC17988 ABC20754 ABC34305 ABC38921
MLOC_67568.1	8628	5e-159	5965 - 6446	88	434 / 493	CUST_13551_PI390587928 CUST_25328_PI390587928 CUST_13376_PI390587928 CUST_18617_PI390587928	ABC07669 ABC17988 ABC20754 ABC30471 ABC34305 ABC38921
MLOC_67568.4	6839	5e-159	4404 - 4885	88	434 / 493	CUST_13551_PI390587928 CUST_25328_PI390587928 CUST_18617_PI390587928	ABC07669 ABC17988 ABC20754 ABC34305 ABC38921
MLOC_67568.5	5944	5e-159	3353 - 3834	88	434 / 493	CUST_13551_PI390587928	ABC07669 ABC17988 ABC20754 ABC38921
MLOC_67568.2	8046	5e-159	5371 - 5852	88	434 / 493	CUST_13551_PI390587928 CUST_25328_PI390587928 CUST_13376_PI390587928 CUST_18617_PI390587928	ABC07669 ABC17988 ABC20754 ABC30471 ABC34305 ABC38921
MLOC_67566.1	6862	5e-159	5691 - 6172	88	434 / 493	CUST_25328_PI390587928 CUST_13376_PI390587928	ABC07669 ABC17988 ABC20754 ABC30471 ABC34305 ABC38921
MLOC_67568.3	8388	5e-159	5874 - 6355	88	434 / 493	CUST_13551_PI390587928 CUST_25328_PI390587928 CUST_13376_PI390587928 CUST_18617_PI390587928	ABC07669 ABC17988 ABC20754 ABC30471 ABC34305 ABC38921
MLOC_67568.6	4656	5e-159	1864 - 2345	88	434 / 493	CUST_13551_PI390587928	ABC20754 ABC38921
MLOC_51579.1	524	5e-144	1 - 277	100	277 / 277	None	ABC38921
MLOC_51579.3	735	5e-144	1 - 277	100	277 / 277	None	ABC20754 ABC38921