- Probe CUST_13376_PI390587928
- Source Contig U35_30523
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13376_PI390587928 | Hv_44K_v2 | CTTTGGTAGGAGGTTCTCCCGCATGTCTTTAATCTTTAAAGAAAAATACCAATATGGATA | 241 | GeneList: midnightblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.392 | 0.368 | 0.632 | 1.554 | 2.813 | 2.880 |
| Raw | 19.914 | 29.315 | 45.038 | 149.414 | 107.370 | 124.795 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_67568.1 | 8628 | 2e-24 | 16 - 75 | 100 | 60 / 60 | minus | ABC07669 ABC17988 ABC20754 ABC30471 ABC34305 ABC38921 |
| MLOC | MLOC_67568.2 | 8046 | 2e-24 | 10 - 69 | 100 | 60 / 60 | minus | ABC07669 ABC17988 ABC20754 ABC30471 ABC34305 ABC38921 |
| MLOC | MLOC_67566.1 | 6862 | 6e-24 | 1 - 59 | 100 | 59 / 59 | minus | ABC07669 ABC17988 ABC20754 ABC30471 ABC34305 ABC38921 |
| MLOC | MLOC_67568.3 | 8388 | 6e-24 | 1 - 59 | 100 | 59 / 59 | minus | ABC07669 ABC17988 ABC20754 ABC30471 ABC34305 ABC38921 |
| JLOC1 | JLOC1_44630.10 | 8006 | 8e-25 | 6700 - 6759 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_44630.9 | 9225 | 8e-25 | 7919 - 7978 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_44629.2 | 9904 | 8e-25 | 1248 - 1307 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_44629.1 | 8563 | 8e-25 | 1248 - 1307 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_44630.8 | 9333 | 8e-25 | 8027 - 8086 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_44630.7 | 8813 | 8e-25 | 7507 - 7566 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_44630.6 | 8182 | 8e-25 | 6876 - 6935 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_44630.5 | 6818 | 8e-25 | 5512 - 5571 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_44630.4 | 9550 | 8e-25 | 8244 - 8303 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_44630.3 | 8548 | 8e-25 | 7242 - 7301 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_44630.2 | 8905 | 8e-25 | 7599 - 7658 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_44630.1 | 7324 | 8e-25 | 6018 - 6077 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC30471 | 318 | 3e-25 | 242 - 301 | 100 | 60 / 60 | plus | ABC30471 |
| Harvest35 | U35_30523 | 318 | 3e-25 | 242 - 301 | 100 | 60 / 60 | plus |
Contig Sequence (318 bp)
>U35_30523 318 Hv_44K_v2 CCGGTCCCAAGCCCGGATGAGAAAATGTGGAGGGATCTGCTGTTAGCTCCTCTGTATCGT TTGCATTAGAACAGTCCTAGTTGAATACTGGATCGTCTTTGGATGCTATGAAAAATCTGG GCAAGTTTAGTCAGGCTGTTGATACAATCTTTCCTACAATTTAAAGATCATAATGGTATT CTTCGTTTTCAGATATGACCTTCGTAAACAAAAATACTGCAATTCCTGCTCGTAGACGGA TCTTTGGTAGGAGGTTCTCCCGCATGTCTTTAATCTTTAAAGAAAAATACCAATATGGAT ATATTAAAAAAAAAAAAA
Homology of Contig U35_30523 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |