barSeed - Barley Seed Development Database

Probe ABC20754

Source Contig ABC20754

barSeed

Links

Affymetrix Source Sequence (638 bp)

>ABC20754 638
GCAGAAACTGGAATACACGGGCCTAGCGGGTGCTCCTATGTGGCCTCAGCATGACGCTTC
TTCTTTCCTGGCTCGAACTTTCTGGAACTTTCTTACTCAATATTAATTAGAACTCAGCAG
ACATTAGTTTTCCCTGTCTTAGTCATTCTCAGCTCTTGCAGATAGTGTCTTGCAAAGGAT
ATATAATTGGAACCGGTGTTGTCTACCTGACCTTCCCAGTCGAGACAGGCTTACTTATCC
TACCTCCTCATCGTTTCATCCTAGTTTTCCCTAACTGAAGCATTTATGGAAATGTATCTT
GCTTGTTGCAGGTCGTAGTTTACGAACTCAAGGCCACCAACCTGATGCTGACTTTGCAGT
TCTTCTAAAACCACTATCTACTCAATTCCTTAACTGAGATAATGTTAATAAGATCTCTTA
CTAGGCAGTATTTTAAATTCAGATTTAGCTGCGAATGGTGCAAGAATGAAGCTTCAAACT
AGTGGCATATCCTACAACCGGAAAAATAATAATCTCCTACCCTCCTATTTTTATTTCATT
CAGCTACATTTTCATGTCTTTGATTTGTGCTTATGCCCTCCATGTCGTTGCAGATCTGTT
TTGCCTAAGACAATGCTTGTAGCGAGTCAAAAATCTTC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK248174.1	5646	8e-138	2555 - 3126	83	480 / 578	CUST_20599_PI390587928 CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC38921 ABC47338
MLOC_47703.1	873	0.0	1 - 595	97	576 / 595	None	ABC20754
AK252458.1	1657	0.0	1123 - 1657	97	518 / 535	None	ABC20754
MLOC_40046.2	3024	0.0	1235 - 1854	88	557 / 632	None	ABC17988 ABC20754
MLOC_40046.1	2113	0.0	1236 - 1855	88	557 / 632	None	ABC20754
MLOC_40046.5	3182	0.0	1144 - 1763	88	557 / 632	None	ABC20754
MLOC_40046.6	2160	0.0	1229 - 1848	88	557 / 632	None	ABC20754
MLOC_40046.4	3554	0.0	1232 - 1851	88	557 / 632	None	ABC17988 ABC20754
MLOC_40046.3	3787	0.0	1235 - 1854	88	557 / 632	None	ABC17988 ABC20754
AK250791.1	2478	0.0	1217 - 1833	88	555 / 632	None	ABC20754
AK250402.1	6765	0.0	1135 - 1791	85	574 / 673	CUST_13551_PI390587928 CUST_25328_PI390587928 CUST_18617_PI390587928	ABC07669 ABC17988 ABC20754 ABC34305 ABC38921
MLOC_76644.4	3775	2e-79	3510 - 3775	87	232 / 267	CUST_31689_PI390587928 CUST_31690_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC29282 ABC47338
MLOC_76643.2	2089	2e-78	1828 - 2088	87	228 / 262	CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754
MLOC_76643.1	2474	1e-80	2207 - 2474	87	234 / 269	CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC47338
MLOC_76644.2	3575	2e-78	3313 - 3573	87	228 / 262	CUST_31689_PI390587928 CUST_31690_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC29282 ABC47338
MLOC_76644.3	3570	2e-78	3308 - 3568	87	228 / 262	CUST_31689_PI390587928 CUST_31690_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC29282 ABC47338
MLOC_76644.5	3679	2e-79	3414 - 3679	87	232 / 267	CUST_31689_PI390587928 CUST_31690_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC29282 ABC47338
MLOC_67568.1	8628	0.0	6698 - 7354	85	573 / 673	CUST_13551_PI390587928 CUST_25328_PI390587928 CUST_13376_PI390587928 CUST_18617_PI390587928	ABC07669 ABC17988 ABC20754 ABC30471 ABC34305 ABC38921
MLOC_67568.4	6839	0.0	5137 - 5793	85	573 / 673	CUST_13551_PI390587928 CUST_25328_PI390587928 CUST_18617_PI390587928	ABC07669 ABC17988 ABC20754 ABC34305 ABC38921
MLOC_67568.2	8046	0.0	6104 - 6760	85	573 / 673	CUST_13551_PI390587928 CUST_25328_PI390587928 CUST_13376_PI390587928 CUST_18617_PI390587928	ABC07669 ABC17988 ABC20754 ABC30471 ABC34305 ABC38921
MLOC_67568.3	8388	0.0	6607 - 7263	85	573 / 673	CUST_13551_PI390587928 CUST_25328_PI390587928 CUST_13376_PI390587928 CUST_18617_PI390587928	ABC07669 ABC17988 ABC20754 ABC30471 ABC34305 ABC38921
MLOC_67568.6	4656	0.0	2504 - 3160	85	573 / 673	CUST_13551_PI390587928	ABC20754 ABC38921
MLOC_76644.6	1927	2e-78	1665 - 1925	87	228 / 262	CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC47338
MLOC_41570.1	331	8e-163	1 - 318	99	316 / 318	None	ABC20754
AK365724	5105	8e-153	993 - 1590	84	510 / 610	None	ABC20754
MLOC_57927.1	4105	8e-153	972 - 1569	84	510 / 610	None	ABC20754
MLOC_57927.3	10063	8e-153	969 - 1566	84	510 / 610	CUST_13328_PI390587928	ABC20754 ABC30492
MLOC_67566.1	6862	5e-125	6424 - 6751	92	301 / 328	CUST_25328_PI390587928 CUST_13376_PI390587928	ABC07669 ABC17988 ABC20754 ABC30471 ABC34305 ABC38921
MLOC_51579.2	884	4e-106	676 - 884	100	209 / 209	None	ABC20754 ABC38921
MLOC_51579.3	735	4e-106	527 - 735	100	209 / 209	None	ABC20754 ABC38921
MLOC_57927.2	3259	3e-97	304 - 649	86	301 / 351	None	ABC20754
MLOC_76644.1	2856	7e-84	2647 - 2836	96	184 / 191	CUST_31689_PI390587928 CUST_31690_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC29282 ABC47338
MLOC_42292.1	367	3e-67	13 - 367	81	292 / 360	None	ABC20754
MLOC_67568.5	5944	1e-65	4086 - 4288	90	182 / 203	CUST_13551_PI390587928	ABC07669 ABC17988 ABC20754 ABC38921
MLOC_26555.1	1030	9e-63	706 - 964	84	223 / 265	CUST_20599_PI390587928	ABC20754 ABC38921