barSeed - Barley Seed Development Database

Probe ABC47338

Source Contig ABC47338

barSeed

Links

Affymetrix Source Sequence (570 bp)

>ABC47338 570
TGCTAGCATTGATTGTGGTTTTTGCTTCCGCCTTGTGGTTGCAGATTGTTTAGCCCAAGC
CATGCTGGTAGCCATCAAAATCTGTCGTATTTTTGGCTTGTGATCCTCTCCTGACTTATA
TTTGGGTAATGTGGATGGCTTGATATGCAAAAAGAGGTTAGGGATTAACGCTATATACCA
AAACAATGGAGAGTTGAAGCTTCTGAACTGGAAGCTTGAACAAACAATTTGCCATGGACA
CTCTACTCCTCATCATGTCTTTGATTAGTGTCATGTCCACTGAATATGATTCCGATTTGT
TGGTATGGAATTGATTTTCAGAAGTGATGTTCTTCTGGTGGTTCTCCAGTGAGATCTTGT
TACGAATCTTCAGTGCATCTTCTCGGTTTGCAACGGAACTTCCTATTTTAATTTGGCAAC
TTGTAAAATAAGTCTTGCTAAATTTGATGATTACTGCTGATTGTATACTTTTCAACTCAA
GTAGCTTGTACATATGTCAGTTTCATTCATGCTGGATGTTCTCATTCAGGTTCTGGAATT
TATAGCTTTCCTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_52476.1	457	0.0	1 - 457	95	438 / 459	None	ABC07668 ABC17988 ABC47338
MLOC_19951.2	2117	0.0	1 - 403	98	399 / 408	CUST_1951_PI390587928	ABC07668 ABC17988 ABC47338
MLOC_19951.1	2110	0.0	1 - 403	98	399 / 408	CUST_1951_PI390587928	ABC07668 ABC17988 ABC47338
MLOC_19951.3	2419	0.0	1 - 403	98	399 / 408	CUST_1951_PI390587928	ABC07668 ABC17988 ABC47338
MLOC_19951.4	1990	0.0	1 - 402	98	398 / 407	CUST_1951_PI390587928	ABC07668 ABC17988 ABC47338
MLOC_19950.1	811	0.0	1 - 391	98	387 / 396	CUST_1951_PI390587928	ABC07668 ABC17988 ABC47338
MLOC_80643.6	3493	2e-167	1810 - 2331	88	462 / 526	CUST_31690_PI390587928 CUST_40368_PI390587928 CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988 ABC29282 ABC47338
MLOC_80643.3	4085	2e-167	1908 - 2429	88	462 / 526	CUST_31689_PI390587928 CUST_40368_PI390587928 CUST_31690_PI390587928	ABC07668 ABC07669 ABC17988 ABC29282 ABC47338
AK248174.1	5646	1e-165	5058 - 5579	88	461 / 526	CUST_31689_PI390587928 CUST_20599_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC38921 ABC47338
MLOC_76644.4	3775	2e-153	1071 - 1584	86	453 / 524	CUST_31690_PI390587928 CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC29282 ABC47338
MLOC_76644.2	3575	2e-153	1072 - 1585	86	453 / 524	CUST_31689_PI390587928 CUST_31690_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC29282 ABC47338
MLOC_76644.1	2856	2e-153	1072 - 1585	86	453 / 524	CUST_31690_PI390587928 CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC29282 ABC47338
MLOC_76644.3	3570	2e-153	1072 - 1585	86	453 / 524	CUST_31690_PI390587928 CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC29282 ABC47338
MLOC_76644.5	3679	2e-153	1071 - 1584	86	453 / 524	CUST_31689_PI390587928 CUST_31690_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC29282 ABC47338
MLOC_76644.6	1927	2e-153	57 - 570	86	453 / 524	CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC47338
MLOC_76643.1	2474	9e-117	1 - 388	87	340 / 390	CUST_31689_PI390587928	ABC07668 ABC07669 ABC17988 ABC20754 ABC47338
MLOC_42444.1	198	1e-86	1 - 198	96	190 / 198	None	ABC17988 ABC47338
MLOC_10162.1	1754	2e-73	1 - 249	88	218 / 249	None	ABC07668 ABC07669 ABC17988 ABC47338