barSeed - Barley Seed Development Database

Probe CUST_40368_PI390587928

Source Contig U35_29808

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40368_PI390587928	Hv_44K_v2	GAAATGCATCCTTGCTATGACGAGTCCAATAAAAAATCTAGGCAACTTCAATTGTAGAAA	179	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.452	0.417	0.724	1.515	2.013	3.166
Raw	3.107	5.076	11.401	35.551	17.006	29.346

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80643.6	3493	6e-24	3131 - 3189	100	59 / 59	plus	ABC07668 ABC07669 ABC17988 ABC29282 ABC47338
MLOC	MLOC_80643.3	4085	6e-24	3229 - 3287	100	59 / 59	plus	ABC07668 ABC07669 ABC17988 ABC29282 ABC47338
JLOC1	JLOC1_53697.6	3384	3e-24	2672 - 2730	100	59 / 59	plus
JLOC1	JLOC1_53697.5	3355	3e-24	2643 - 2701	100	59 / 59	plus
JLOC1	JLOC1_53697.4	3296	3e-24	2584 - 2642	100	59 / 59	plus
JLOC1	JLOC1_53697.3	3124	3e-24	2412 - 2470	100	59 / 59	plus
JLOC1	JLOC1_53697.2	3144	3e-24	2432 - 2490	100	59 / 59	plus
JLOC1	JLOC1_53697.1	3118	3e-24	2515 - 2573	100	59 / 59	plus
Harvest21	ABC29282	249	3e-25	180 - 239	100	60 / 60	plus	ABC29282
Harvest35	U35_29808	249	3e-25	180 - 239	100	60 / 60	plus

Contig Sequence (249 bp)

>U35_29808 249 Hv_44K_v2
GGATGAGAAAATGTGGAGGGAACTGCATCGTTTCCACTAGAACTTGCATGGTCTCTAAAT
ATTTTAATTTGAGTGGACAGGGAATGAAGTGTGTAGAAGTTACAGAGTTACTGTCCTTAA
TGTCCTATAATCAAACAGTGACTTGTAGCATACTCTGGTAAGCATATGATTCAATCTTTG
AAATGCATCCTTGCTATGACGAGTCCAATAAAAAATCTAGGCAACTTCAATTGTAGAAAA
AAAAAAAAA

Homology of Contig U35_29808 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None