barSeed - Barley Seed Development Database

Probe ABC02118

Source Contig ABC02118

barSeed

Links

Affymetrix Source Sequence (1200 bp)

>ABC02118 1200
AATTTGCACATGAGCTAAATATTTGGCTATAAATATGCATGCGATGTACAACTCTCTTGC
ACAAGCCACTAAGCTCCACAACCAGCAAGTGGCTAGTAAGGCACACGCATTGCTTTGGTC
TTATCGCTAGCTAGCTAATAACCATGGCTTCTTCCTCATACACTTCCTTGCTGGTGCTCG
TGGCTCTGGTCACGGCGGCGTCGGCGCAGCTGTCGCCGACGTTCTACGACACGTCGTGCC
CCAGGGCTCTGGCCACCATCAAGAGCGGCGTCATGGCCGCCGTGACGAGTGACCCCCGCA
TGGGCGCCTCGCTGCTCCGGCTGCACTTCCACGACTGTTTCGTCCAAGGCTGCGACGCAT
CTGTTCTGCTGTCCGGCATGGAACAAAACGCTATCCCGAACGCGGGGTCGCTGAGGGGCT
TCGGCGTCATCGACAGCATCAAGACGCAGATCGAGGCCATTTGCAAGCAGACCGTCTCCT
GTGCCGACATACTCACCGTCGCCGCCCGCGACTCCGTCGTCGCCCTCGGTGGCCCATCAT
GGACAGTCCCTCTGGGGAGAAGAGATTCCATAGATGCAAACGAGAATGAGGCAAACACGG
ACCTTCCAGGCTTTAATTCTAGCCGCGCAGAGCTTGAGGCGGCATTCCTCAAGAAGGGTG
GCCTCAACACGGTCGACATGGTGGCCCTCTCCGGCGCGCACACCATCGGCCAGGCGCAGT
GCTCGACCTTTCGGGCTCGGATCTACGGCGGCGACACCAACATCAACACGGCCTATGCGG
CGTCGCTTAGGGCCAACTGCCCGCAGACAGTCGGCTCCGGTGACGGCAGCCTGGCGAATC
TGGACACGACGACGGCCAACACGTTCGACAACGCCTACTACACCAACCTCATGTCCCAGA
AGGGGCTCCTGCACTCGGACCAGGTGCTGTTCAACAACGACACCACCGACAACACCGTCC
GGAACTTTGCGTCCAACCCGGCGGCGTTCAGCAGCGCCTTCACGACGGCCATGATCAAGA
TGGGCAACATCGCTCCCAAGACAGGGACGCAGGGCCAGATCAGGCTCAGCTGCTCCAGGG
TGAACTCGTGATCGACGGACGAGCTGCTATACCTACCAGCCGGCAGCTCGCTAGCACGAT
ACGTGAATGAATAAGGCGAACCAGTGGCCAATATAAACACCANCACTTGAAAACGTCTAT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_55663.1	1360	0.0	8 - 1207	99	1199 / 1200	CUST_3803_PI390587928	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119 ABC02123 ABC45487 ABC50221
MLOC_65226.3	1202	0.0	58 - 1099	87	920 / 1058	None	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119 ABC02123 ABC45487 ABC50221
AK361868	2749	0.0	1533 - 2510	85	838 / 983	CUST_16880_PI390587928 CUST_376_PI415269222	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119 ABC02123 ABC19066 ABC45487 ABC50221
MLOC_39127.1	1362	0.0	59 - 1035	84	836 / 993	CUST_3834_PI390587928	ABC02112 ABC02114 ABC02118 ABC02119 ABC02123 ABC39292 ABC45487 ABC50221
MLOC_65225.2	1290	0.0	89 - 1076	81	801 / 995	None	ABC02112 ABC02114 ABC02118 ABC02119 ABC02123 ABC18641 ABC45487 ABC50221
MLOC_65225.3	945	1e-157	141 - 612	88	418 / 475	CUST_3805_PI390587928	ABC02112 ABC02114 ABC02118 ABC02119 ABC02123 ABC45487 ABC50221
AK355507	1268	1e-148	85 - 994	78	718 / 926	None	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119 ABC18641
MLOC_79176.1	1204	1e-148	211 - 1126	78	724 / 934	CUST_3830_PI390587928	ABC02112 ABC02113 ABC02115 ABC02118 ABC02119 ABC18641
MLOC_65226.1	445	6e-117	61 - 444	87	333 / 384	CUST_376_PI415269222	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119
MLOC_65226.2	432	3e-110	61 - 432	86	321 / 372	CUST_376_PI415269222	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119
MLOC_62622.2	1214	2e-101	377 - 1126	76	580 / 764	None	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC18641
AK360063	1417	7e-96	85 - 434	85	299 / 352	CUST_3833_PI390587928	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119 ABC18641