barSeed - Barley Seed Development Database

Probe ABC02114

Source Contig ABC02114

barSeed

Links

Affymetrix Source Sequence (1523 bp)

>ABC02114 1523
GCACTAAGCCACCACCAGATAACGAGTAGTGCAGACAGCCTAGTAGTAGCTTTGGTCTTG
CGGCTAGCTTGGTAACCATGGCCGCCTCTGCCTCTTGCATCTCTCTGGTGGTGCTCGTGG
CCCTGTCAACGGCGGCGTCGGCGCAGCTGTCCCCGACGTTCTACAGCGCGTCGTGCCCCG
GGGCGCTGGCCACCATCAAGAGCGCCGTGGCGGCCGCCGTGAGCAAGGACCCTCGCATGG
GCGCCTCGCTGCTCAGGCTGCACTTCCACGACTGCTTTGTCCAAGGCTGCGACGCGTCTG
TTCTGCTGTCCGGCAACGAGCAGAACGCGGGTCCGAATGCAGGGTCACTGAGGGGCTTCG
ACGTCATCGATAGCATCAAGGCGCAGGTCGAGGCCGTGTGCAGGCAGACGGTCTCCTGCG
CCGACATCCTCGCCGTCGCCGCCCGTGACTCCGTCGTCGCCCTCGGAGGCCCGTCATGGA
CAGTTCCACTGGGAAGAAGGGACTCGACCACCGCAAACGCAGGTTTGGCAAACAGCGATC
TCCCTGGCCCTGGCTCCAGCCGGGCACAGCTCGAGGCCGCGTTCCTCAAGAAGGGCCTGA
ACACGGTCGACATGGTGGCCCTCTCCGGCGCGCACACCATCGGGCGGGCGCAGTGCAGTT
CCTTCCGCTCCCGGATCTACGGCGGCGACACCAACATCAACGCCGCCTACGCCGCGTCGC
TCCGGGCCAACTGCCCCCAGTCCGGCGGCAACGGCAACCTGGCGTCGCTGGACACGACGA
CGCCCAACACTTTCGACAACGCCTACTACAAGGACCTGCTGTCCCAGAAGGGCCTCATGC
ACTCGGACCAGGTGCTCTTCAACGGCGACACCACCGACAACACCGTCCGCAACTTCGCGT
CCAACCCGGCCGCGTTCACCAGCGCCTTCACGACGGCCATGATCAAGATGGGCAACATCG
CGCCGCTCACCGGGACGCAGGGCCAGGTCAGGCTCACCTGCTCCAAGGTGAACTCCTGAT
CGACGTACACGTCGACACGACACGCCAATGAATAAGTCCACAGAAGCAATAGCCAAGACC
AATTATAGCACTTCACAACCCGTCGTGCATGCCGTGGTGCTTGAAGACTTGAAATTTCAA
ATGCGCTCCTGGATTTCGAAGTGTGACGTTCGGACATGCAGAGGAGAGATGCGAACAGTG
CAACCCATGCACTAGCCAATCTACTAGCCTGCAGTAATGTAATGGTACACATGCTTTAAC
GTCGGAATACGACTGTCCAGCAGCAAAAATGACTTACGGCTTGTTTTTACAAAAAGTTAC
AGAAAAAAAAAAAAAAAAAAACCCTCACTAATCTCTTCCTGATTCTCAGGATGGGGCCGG
CCTCATCCTCTAATCACCAATTAAAACAATCCATCTCAGCCTTATCTGTAGAAATTATGT
AAAACATCCGTAGTCTAGCAAATGTTGCTGATAATGAAATGGGTGGCAAGCCCACGTCTT
AATAAAAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_39127.1	1362	0.0	12 - 1297	99	1267 / 1286	CUST_3834_PI390587928	ABC02112 ABC02114 ABC02118 ABC02119 ABC02123 ABC39292 ABC45487 ABC50221
AK361868	2749	0.0	1533 - 2502	85	829 / 970	CUST_376_PI415269222 CUST_16880_PI390587928	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119 ABC02123 ABC19066 ABC45487 ABC50221
MLOC_55663.1	1360	0.0	179 - 1104	85	792 / 930	CUST_3803_PI390587928	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119 ABC02123 ABC45487 ABC50221
MLOC_65226.3	1202	0.0	77 - 1035	84	805 / 964	None	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119 ABC02123 ABC45487 ABC50221
MLOC_65225.2	1290	0.0	131 - 1068	82	773 / 938	None	ABC02112 ABC02114 ABC02118 ABC02119 ABC02123 ABC18641 ABC45487 ABC50221
MLOC_65225.3	945	5e-168	38 - 604	86	486 / 567	CUST_3805_PI390587928	ABC02112 ABC02114 ABC02118 ABC02119 ABC02123 ABC45487 ABC50221
AK355507	1268	1e-138	104 - 994	77	696 / 902	None	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119 ABC18641
MLOC_62622.2	1214	6e-118	270 - 1132	76	664 / 873	None	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC18641
MLOC_65226.1	445	3e-105	61 - 444	85	326 / 384	CUST_376_PI415269222	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119
MLOC_65226.2	432	4e-99	61 - 430	85	313 / 370	CUST_376_PI415269222	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119
AK360063	1417	3e-90	104 - 434	85	282 / 332	CUST_3833_PI390587928	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119 ABC18641