barSeed - Barley Seed Development Database

Probe ABC02115

Source Contig ABC02115

barSeed

Links

Affymetrix Source Sequence (1195 bp)

>ABC02115 1195
AATTAAGTGACGTTGCATTTGAGCTAGCTAGCCATGACCTCTTCGTCCCTATCAGTGGTG
TTGCTCTTGTGCCTGGCCGTGGCGGCGTCGGCGCAGCTGTCGCCGACGTTCTACCAAACG
ACGTGCCCGAACGCTCTGTCCACCATCAAGGCCGCCGTGACGGCCGCCGTGAACAATGAG
AACCGCATGGGCGCGTCGCTGCTCCGGCTGCACTTCCACGACTGCTTCGTCCAAGGTTGT
GACGCGTCTGTTCTGCTGTCTGGCATGGAACAAAACGCGGCGCCGAACGTCATGTCCCTG
CGAGGCTTCGAAGTCATAGACAGCATCAAGGCGAAGCTCGAGACCATGTGCAAGCAGACC
GTCTCCTGCGCCGACATCCTCACCGTCGCTGCCCGCGATTCCGTCGTCGCCTTGGGAGGG
CCATCGTGGACGGTTCCGCTAGGAAGGAGGGACTCCACCAATGCAAACGAAGCAGCGGCG
AACTCCGACCTACCTCCCCCGTTCTTCGACCTCGTCAACCTCACCCAATCCTTCGGCGAC
AAGGGCTTCACCGTCACCGACATGGTCGCGCTCTCCGGTGCCCACACCATCGGACAGGCG
CAGTGCCAGAACTTCAGGGATAGGCTCTACAACGAGACTAACATCAACTCCGGCTTCGCG
ACGTCGCTCAAGGCCAACTGCCCCCGGCCGACCGGCTCCGGCGACCGCAACCTGGCCAAT
CTGGACGTGTCTACCCCGTACTCATTCGACAACGCCTACTACAGCAACCTCAAGTCCCAG
AAGGGGCTCCTGCACTCTGACCAGGTGCTCTTCACCGGCACGGGCGGCGGCACGGACAAC
ATCGTCAACAACTTCGCGAGCAACCCAGCTGCGTTCAGCGGCGCCTTTGCCTCGGCCATG
GTGAAGATGGGGAACCTCAGCCCATTGACTGGCTCTCAGGGGCAGGTCAGGCTGAGCTGC
TCCAAGGTGAATTAACTGGCAAAAAATAATGATATATGTGGGATTAATAAGGCTAGCAAT
GGCCAATATATATAATATCATGTATTGTATATTATATACAATCCATGATGTACTTAGGTG
TCGTTACTTGGACCATAAACTTGTGAAACAGGAGATGTGTCATATATGTATGTCACAAGG
GCCTCGTGCAAAGGCATGAAGCTTTCTCTTAAAAAAAAAAAAAGGAAATTAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK355507	1268	0.0	50 - 1196	99	1133 / 1147	None	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119 ABC18641
MLOC_79176.1	1204	0.0	153 - 1181	93	961 / 1030	CUST_3830_PI390587928	ABC02112 ABC02113 ABC02115 ABC02118 ABC02119 ABC18641
AK360063	1417	0.0	50 - 434	98	377 / 385	CUST_3833_PI390587928	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119 ABC18641
MLOC_8172.1	882	0.0	2 - 763	99	756 / 762	CUST_3833_PI390587928	ABC02113 ABC02115 ABC18641
MLOC_62622.2	1214	1e-178	222 - 1155	79	743 / 941	None	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC18641
MLOC_65226.3	1202	1e-168	119 - 1022	79	728 / 924	None	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119 ABC02123 ABC45487 ABC50221
AK361868	2749	1e-157	1577 - 2489	78	724 / 928	CUST_376_PI415269222 CUST_16880_PI390587928	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119 ABC02123 ABC19066 ABC45487 ABC50221
MLOC_36363.1	1187	5e-157	70 - 1024	78	756 / 973	CUST_12661_PI390587928 CUST_375_PI415269222	ABC02113 ABC02115 ABC18641
MLOC_55663.1	1360	2e-150	182 - 1091	78	718 / 925	CUST_3803_PI390587928	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119 ABC02123 ABC45487 ABC50221
MLOC_74605.1	1253	4e-138	82 - 995	77	720 / 935	CUST_37802_PI390587928 CUST_15503_PI390587928	ABC02112 ABC02113 ABC02115 ABC02119 ABC02123 ABC18641 ABC50221
MLOC_65225.1	1253	2e-126	155 - 1044	77	697 / 911	None	ABC02115 ABC18641
MLOC_65226.1	445	6e-87	105 - 444	84	286 / 341	CUST_376_PI415269222	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119
MLOC_65226.2	432	6e-82	105 - 432	84	275 / 329	CUST_376_PI415269222	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119