barSeed - Barley Seed Development Database

Probe CUST_376_PI415269222

Source Contig BE412845

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_376_PI415269222	Hv_44K_v2	CAAAACCCAGCTGGAGAGTATATGCAAGCAGACCGTCTCTTGCGCCGACATCCTCACCGT	367	GeneList: thistle2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.676	0.936	2.311	1.328	1.009	1.047
Raw	7.799	16.241	38.757	29.339	9.279	10.889

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361868	2749	2e-24	1848 - 1907	100	60 / 60	plus	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119 ABC02123 ABC19066 ABC45487 ABC50221
MLOC	MLOC_65226.1	445	2e-24	376 - 435	100	60 / 60	plus	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119
MLOC	MLOC_65226.2	432	7e-23	376 - 432	100	57 / 57	plus	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119
JLOC1	JLOC1_42910.3	1511	8e-25	378 - 437	100	60 / 60	plus
JLOC1	JLOC1_42910.1	1255	8e-25	122 - 181	100	60 / 60	plus
Harvest21	ABC02112	1289	3e-25	371 - 430	100	60 / 60	plus	ABC02112
Harvest35	U35_14351	1366	3e-25	386 - 445	100	60 / 60	plus

Contig Sequence (960 bp)

>BE412845 960 Hv_44K_v2
GCACAGCCAGATAACAAAGTGCAGGTAGCACGCATAGCCCTGGACTAGTAGCTAGGTAGC
TAACCATGGCCATGGGTTCTGCCTCTTGCATTTCTCTGGTGTTGCTCGTGGCTCTGGCCA
CGGCGGCGTCGGGGCAACTGTCGTCGACGTTCTACGACACGTCGTGCCCCAGGGCTCTGG
CCACCATCAAGAGCGGCGTGGCGGCCGCCGTGAGCAGCGACCCCCGCATGGGCGCGTCCC
TGCTCAGGCTTCACTTCCACGACTGCTTTGTCCAAGGCTGTGATGCATCTGTCCTGCTGT
CTGGCATGGAACAAAACGCGGGTCCGAACCTGGGGTCGCTGAGGGGCTTCGGCGTCATCG
ACAGCATCAAAACCCAGCTGGAGAGTATATGCAAGCAGACCGTCTCTTGCGCCGACATCC
TCACCGTCGCCGCCCGGGACTCCGTCGTCGCCCTTGGAGGGCCGTCGTGGACTGTCCCGC
TGGGGAGACGGGACTCCACCACCGCAAGCGCGGCGCTGGCAAACAGCGACCTCCCTGGCC
CTGGCTCCAGCCGGTCGCAGCTCGAGGCCCGCGTTCCTCAAGAAGAACCTCAACACGGTC
GACATGGTCCGCGCTCTCTGGCGCGCACACCATCGGCAAGGCCCGCTGGCTCCACCTTCC
GGACTCGGATCTACGGCGGCGAACACCAAACATCAAACGCCCGCCTTTCGCGACGTTNGC
TTCAAGGGNCCAAACTGGCCCAACAAGACAAACCCGGGCTTCCCGGCGGAACCGGGCAAA
CCCTTAAACCGNAACCCTTGGNACAACGGAACCAACGGCCCCNAAACGGGGGTTTCGGAA
CAAACCGNCCTTNACTTAACAACCCNAACCCTTCCTTGGTNCCCCAAAAAANGGGGGCCT
TCCCTGGCAACTTTNGGGAACCCAAGGGNGGCCTTTTTTTNAAACNAAACCGAACAACCC

Homology of Contig BE412845 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g48030.1	315	4e-75	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g17850.1	315	1e-79
Arabidopsis v10	AT5G05340.1	324	1e-53	Peroxidase superfamily protein \| chr5:1579142-1580819 REVERSE LENGTH=324