barSeed - Barley Seed Development Database

Probe ABC02007

Source Contig ABC02007

barSeed

Links

Affymetrix Source Sequence (770 bp)

>ABC02007 770
GCTCAACCGAGCGCCAAGCAAAAGCAGACAACAACCTACCTACGATCAGAATTTTCCCCG
AGCTACAAACCAAAGCAGCACCGACGATGTCGATCGTGAGGCGTAGCAACGCGTTCGACC
CCTTCGCCGACCTCTGGGCTGACCCGTTCGACACCTTCCGCTCCATCGTCCCGGCGTTCT
CTAGCAACAGCGAGACGGCCGCCTTCGCCAATGCTCGCGTCGACTGGAAGGAGACCCCGG
AGGCGCACGTCTTCAAGGCCGACCTTCCCGGCGTGAAGAAGGAGGAGGTCAAGGTGGAGG
TGGAGGACGGCAACGTGCTCGTTGTCAGCGGCGAGCGCACTAAGGAGGAGGAGGACAAGA
ACGACAAGTGGCACCGTGTGGAGCGTAGCAGCGGCAAGTTCGTGCGGCGCTTCCGCTTGC
CGGAGGACGCCAAGGTGGAGGAGGTGAAGGCCGGCCTGGAGAACGGTGTGCTCACTGTCA
CCGTGCCCAAGGCCGAGGTCAAGAAGCCTGAGGTGAAGGCCATCGAGATCTCCGGCTGAA
TGCATGCGCCTCGACGTATACTCTGGTTGGAGCGAGTTTGGTTGATGTGTGCGAGTTCTG
CAACCTGAAACTATGCTACAGTTGTGTCGTTGTTCTTGCCGAGTCTAGAGAGAAATCTCT
GTATTGTGTTTCTTTCCCCAGTCGTTTCGGTACTTATGTAATCGCCAACAGGTGAATAAT
AAATGAGAAATAAAGTGTGCTGATTTTGGGTGCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_44536.1	956	0.0	94 - 846	100	753 / 753	CUST_21202_PI390587928 CUST_21174_PI390587928	ABC02002 ABC02004 ABC02007 ABC02008 ABC02014 ABC31513
AK252757.1	771	0.0	9 - 753	98	731 / 745	None	ABC02002 ABC02004 ABC02007 ABC02008 ABC02014 ABC31513
MLOC_45029.1	1071	0.0	92 - 790	87	607 / 700	None	ABC02002 ABC02004 ABC02006 ABC02007 ABC02008 ABC02010 ABC02014 ABC31513
AK362925	2689	0.0	12 - 705	86	617 / 720	CUST_21181_PI390587928 CUST_21183_PI390587928 CUST_21178_PI390587928	ABC02002 ABC02004 ABC02006 ABC02007 ABC02008 ABC02012 ABC02014 ABC04119 ABC21725 ABC31513 ABC31735
MLOC_74996.1	968	0.0	238 - 788	90	497 / 551	None	ABC02002 ABC02004 ABC02006 ABC02007 ABC02008 ABC02012 ABC02014 ABC31513
AK250582.1	793	0.0	9 - 771	84	650 / 778	None	ABC02002 ABC02004 ABC02007 ABC02008 ABC02014 ABC31513
MLOC_68435.1	970	2e-174	64 - 626	87	489 / 563	None	ABC02002 ABC02004 ABC02007 ABC02008 ABC02014 ABC31513
MLOC_25990.1	835	9e-173	14 - 735	82	631 / 767	CUST_21180_PI390587928	ABC02002 ABC02004 ABC02007 ABC02008 ABC02014 ABC31513
MLOC_26766.1	562	4e-92	1 - 318	87	277 / 319	None	ABC02002 ABC02004 ABC02007 ABC02008
MLOC_30920.1	414	2e-89	1 - 308	87	267 / 308	None	ABC02004 ABC02007 ABC02014
MLOC_44537.1	686	1e-87	345 - 686	84	309 / 368	CUST_21181_PI390587928 CUST_21183_PI390587928 CUST_21178_PI390587928	ABC02002 ABC02004 ABC02007 ABC02008 ABC02014 ABC31513