barSeed - Barley Seed Development Database

Probe ABC04119

Source Contig ABC04119

barSeed

Links

Affymetrix Source Sequence (1363 bp)

>ABC04119 1363
CCTCCGCCCCCTTCCACTCGCTCTCCGCCAGGGGCTCACAAGGGAAGGCGCGGGACGCGA
GCTGGTGGTGGGGAATGGCCGGCGCGTCCTCGCCGCCCCCGACGCCCAAGTCGCCCAAGC
TGCAGCCGCCCCTCCTCGAGCGCACCAAGGGCCCCTCCGGCCTCGACAAGATCGTGCTCC
GCGACCCGGGCCGCTTCACCGCCGAGGTCCGTCTATATGGAGGGCAAGTTACCTCTTGGA
AGAATGAACAGGGGGATGAGTTACTTTTTGTAAGCAGCAAGGCAGTTTTTAAGTCTCCAG
GAGCAATTCGTGGTGGCATACCCATTTGCTTTCCCCAGTTTGGAACACATGGAAATCTTG
AAAAACATGGATTTGCGAGGAACCGGCTATGGCTCGTTGATGATAATCCTCCACCACTCC
CAGTAAACAGCGGTATTAAAACTTATGCAGATCTCATTCTGAAGCCTTCTGAAGAAGATC
TCAAGATCTGGCCTCACAGATTTGAATTCCGATTCACGGAGCAGGGGGATGCTCTTGTGT
TTGAATCAGAGATTGACAAAATATATCTGGACACACCACCAAAAATTGCAATTATTGATC
ATGAGAAGAAAAGAACATTTGTGCTTAGGAAAGATGGGCTTCCAGATGCTGTTGTATGGA
ACCCATGGGAGAGGAGGTCAAAAACCATTCTGGATTTTGGTGATGAAGAATATAAGCACA
TGTTGTGTGTGGAGCCTGCAGCTGTTGAGAAGCCCATTACCTTGAAGCCTGGTGAAGAGT
GGAAAGGAAGGTTGGAGCTCTCAGCTGTTCCTTCCAGTTACTATAGTGGTCAGTTAGATC
CAGACAAGGTTCTTCATGGTTGAAAATCCTCACTTGGTGCATCTCGTACAGGAACACTTC
AGGGCACTTTATATTACCTGGTGCTCTGTCTGTCCGGTGTTGATGCTATGTGGACTTGCT
GGCTTTCATCTCCTCCATCGTCTCCGCCTACATATGTTTATTTCTTCATGTATAGAAGGA
GGAGGCGAGCACCGGAATAACAAAACAGCCTGAGTGTCTCTATCTCGAAATCTGTCTTCG
ATGCACTCAGCTCAGTGTTCAGTCGCAGCAAAAAAAGAAGCGAATAATAGCATTCCGATA
GTTTAGGGTTGCCTCCTGGCCCTGGACAATGGGTGATTTGTTGTACTTCTGCATCGGAGT
ACCAATTGTTATCAGACTATTGTCTGTACTCCTCTAAGATCTGTACATATACTATCTTAG
GAACTTGCTGGTGTGAGATAATTCAAGGAGCACAATTTATCATGTGCTGCTGGTAATATA
TAAAGCGTGTTCTGAACCTTAATAAAAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK369940	1548	0.0	17 - 530	99	513 / 514	CUST_7681_PI390587928 CUST_7682_PI390587928	ABC04118 ABC04119
MLOC_62518.4	1279	6e-162	4 - 313	100	310 / 310	CUST_7681_PI390587928	ABC04118 ABC04119 ABC21725
MLOC_62518.1	1564	2e-161	455 - 763	100	309 / 309	CUST_7681_PI390587928	ABC04118 ABC04119 ABC21725
MLOC_62518.3	981	3e-155	4 - 319	98	311 / 316	CUST_7681_PI390587928	ABC04118 ABC04119 ABC21725
MLOC_62518.2	1546	2e-162	574 - 884	100	311 / 311	CUST_7681_PI390587928	ABC04118 ABC04119 ABC21725
MLOC_62518.5	3678	9e-81	3 - 166	100	164 / 164	CUST_7681_PI390587928 CUST_28930_PI390587928	ABC04119 ABC21725
MLOC_77308.1	477	3e-105	269 - 476	100	208 / 208	None	ABC04119
AK362925	2689	7e-62	1388 - 1746	79	284 / 360	CUST_21181_PI390587928 CUST_21183_PI390587928 CUST_21178_PI390587928	ABC02002 ABC02004 ABC02006 ABC02007 ABC02008 ABC02012 ABC02014 ABC04119 ABC21725 ABC31513 ABC31735
MLOC_73373.1	1028	2e-61	664 - 911	84	212 / 252	None	ABC04119 ABC21725
MLOC_73373.4	483	1e-59	102 - 340	84	205 / 243	None	ABC04119 ABC21725
MLOC_73373.3	377	4e-59	23 - 260	84	204 / 242	None	ABC04119 ABC21725
MLOC_73373.2	647	4e-59	267 - 504	84	204 / 242	None	ABC04119 ABC21725
AK371019	2548	2e-53	1509 - 1806	80	238 / 299	None	ABC04119 ABC31735