- Probe CUST_21178_PI390587928
- Source Contig U35_14865
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21178_PI390587928 | Hv_44K_v2 | AAATACAGTTGTGACTTGTTCTTGTCGAGTCTGGTTGAGGCATCTCTGTATCGCGTTTCT | 602 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.018 | 0.055 | 0.445 | 1.920 | 3.591 | 6.168 |
| Raw | 344.692 | 2219.125 | 15259.050 | 93488.633 | 63838.567 | 121416.666 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK362925 | 2689 | 7e-23 | 614 - 673 | 98 | 59 / 60 | plus | ABC02002 ABC02004 ABC02006 ABC02007 ABC02008 ABC02012 ABC02014 ABC04119 ABC21725 ABC31513 ABC31735 |
| MLOC | MLOC_44537.1 | 686 | 7e-23 | 377 - 436 | 98 | 59 / 60 | minus | ABC02002 ABC02004 ABC02007 ABC02008 ABC02014 ABC31513 |
| JLOC1 | JLOC1_28871.1 | 396 | 4e-23 | 85 - 144 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC02011 | 662 | 3e-25 | 603 - 662 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC02015 | 729 | 1e-23 | 604 - 663 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC02004 | 731 | 1e-23 | 595 - 654 | 98 | 59 / 60 | plus | ABC02004 |
| Harvest35 | U35_14865 | 662 | 3e-25 | 603 - 662 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14862 | 753 | 1e-23 | 624 - 683 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_14860 | 731 | 1e-23 | 595 - 654 | 98 | 59 / 60 | plus |
Contig Sequence (662 bp)
>U35_14865 662 Hv_44K_v2 CTCAACCGAGTGCCAAGCAAAAGCAGACAGCATCCTACCTACGATCCGAGATACTGAATT TTCCCTCAGGTACAAAATCGAAAGCAACACCTACAATGTCGATCGTGAGGCGTAGCAACG TGTTCGACCCCTTCGCCGACCTCTGGGCGGACCCCTTCGACACCTTCCGCTCCATCGTCC CGGCGATCTCAGGCAGCAACAGCGAGACAGCTGCGTTCGCGAACGCCCGGATGGACTGGA AGGAGACGCCCGAGGCGCACGTCTTCAAGGCTGATCTTCCTGGCGTGAAGAAGGAGGAGG TCAAGGTGGAGGTGGAGGACGGCAACGTGCTCGTCGTCAGCGGCGAACGCACTAAGGAGA AGGAGGACAAGAACGATAAGTGGCACCGCGTGGAGCGTAGCAGCGGCAAGTTTGTGAGGC GCTTCCGCCTGCCGGAGGACGCCAAGGTGGAGGAGGTGAAGGCCGGGCTGGAGAACGGTG TGCTCACCGTCACCGTGCCCAAGACAGAGGTCAAGAAGCCCGAGGTGAAGGCCATCGAGA TCTCCGGCTGAGTATTCGAGTCGGAGCCATTCTGGTTGATGTGTGTGCGAGTTCTGCAGC CTAAATACAGTTGTGACTTGTTCTTGTCGAGTCTGGTTGAGGCATCTCTGTATCGCGTTT CT
Homology of Contig U35_14865 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g04370.1 | 151 | 2e-62 | protein|hsp20/alpha crystallin family protein, putative, expressed |
| Brachypodium v1_2 | Bradi2g02400.1 | 155 | 1e-65 | |
| Arabidopsis v10 | AT5G59720.1 | 161 | 2e-51 | | Symbols: HSP18.2 | heat shock protein 18.2 | chr5:24062632-24063117 FORWARD LENGTH=161 |