barSeed - Barley Seed Development Database

Probe CUST_21174_PI390587928

Source Contig U35_14869

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21174_PI390587928	Hv_44K_v2	GTAATCGCCAACAGGTGAATAATAAATGAGAAATAAAGTGTGCTGATTTTGGGTGCAAAA	703	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.012	0.025	0.464	1.586	2.337	4.099
Raw	91.771	500.278	8050.467	39791.633	21021.233	41156.667

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44536.1	956	7e-23	94 - 150	100	57 / 57	minus	ABC02002 ABC02004 ABC02007 ABC02008 ABC02014 ABC31513
JLOC1	JLOC1_28870.1	852	4e-23	91 - 147	100	57 / 57	minus
Harvest21	ABC02016	775	3e-25	702 - 761	100	60 / 60	plus
Harvest21	ABC02007	770	3e-25	698 - 757	100	60 / 60	plus	ABC02007
Harvest35	U35_14869	777	3e-25	704 - 763	100	60 / 60	plus
Harvest35	U35_14857	464	5e-23	390 - 445	100	56 / 56	plus

Contig Sequence (777 bp)

>U35_14869 777 Hv_44K_v2
ATCCAAACTCAACCGAGCGCCAAGCAAAAGCAGACAACAACCTACCTACGATCAGAATTT
TCCCCGAGCTACAAACCAAAGCAGCACCGACGATGTCGATCGTGAGGCGTAGCAACGCGT
TCGACCCCTTCGCCGACCTCTGGGCTGACCCGTTCGACACCTTCCGCTCCATCGTCCCGG
CGTTCTCTAGCAACAGCGAGACGGCCGCCTTCGCCAATGCTCGCGTCGACTGGAAGGAGA
CCCCGGAGGCGCACGTCTTCAAGGCCGACCTTCCCGGCGTGAAGAAGGAGGAGGTCAAGG
TGGAGGTGGAGGACGGCAACGTGCTCGTTGTCAGCGGCGAGCGCACTAAGGAGAAGGAGG
ACAAGAACGACAAGTGGCACCGTATGGAGCGTAGCAGCGGCAAGTTCGTGAGGCGCTTCC
GCCTGCCGGAGGACGCCAAGGTGGAGGAGGTGAAGGCCGGACTGGAGAACGGTGTGCTCA
CCGTCACCGTGCCCAAGACAGAGGTCAAGAAGCCCGAGGTGAAGGCCATCGAGATCTCCG
GCTGAATGCATGCGCCTCGACGTATACTCTGGTTGGAGCGAGTTTGGTTGATGTGTGCGA
GTTCTGCAACCTGAAACTATGCTACAGTTGTGTCGTTGTTCTTGCCGAGTCTAGAGAGAA
ATCTCTGTATTGTGTTTCTTTCCCCAGTCGTTTCGGTACTTATGTAATCGCCAACAGGTG
AATAATAAATGAGAAATAAAGTGTGCTGATTTTGGGTGCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14869 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g04370.1	151	1e-61	protein\|hsp20/alpha crystallin family protein, putative, expressed
Brachypodium v1_2	Bradi2g02400.1	155	7e-65
Arabidopsis v10	None