- Probe CUST_21180_PI390587928
- Source Contig U35_14863
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21180_PI390587928 | Hv_44K_v2 | CTAAATACAGTTGTGTCTTTGTTCTTGTCGAGTCTGGTTGAGACATCTTTGTATCGCGTT | 581 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.011 | 0.022 | 0.425 | 1.800 | 3.017 | 4.578 |
| Raw | 246.927 | 1416.052 | 24860.600 | 147053.266 | 91465.300 | 153704.333 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_25990.1 | 835 | 2e-24 | 103 - 162 | 100 | 60 / 60 | minus | ABC02002 ABC02004 ABC02007 ABC02008 ABC02014 ABC31513 |
| JLOC1 | JLOC1_17679.1 | 670 | 8e-25 | 521 - 580 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC02008 | 641 | 3e-25 | 582 - 641 | 100 | 60 / 60 | plus | ABC02008 |
| Harvest21 | ABC02002 | 711 | 3e-25 | 558 - 617 | 100 | 60 / 60 | plus | ABC02002 |
| Harvest35 | U35_14863 | 641 | 3e-25 | 582 - 641 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14858 | 711 | 3e-25 | 558 - 617 | 100 | 60 / 60 | plus |
Contig Sequence (641 bp)
>U35_14863 641 Hv_44K_v2 GTCAAACAAAAGCAGATAACATCCGACGATCCGATACAGAATTTTCCGAACGCACAAGCC GAAGCAATCAACACCGGTAATGTCGATCGTGAGGCGGAGCAACGTTTTCGACCCCTTCGC TGACCTCTGGGCGGACCCCTTCGACACCTTCCGCTCCATCATCCCGGCGATCTCTGGCAA CAGCGAGACGGCCGCCTTCGCCAATGCTCGCATGGACTGGAAGGAGACCCCGGAGGCGCA CGTCTTCAAGGCCGACCTTCCCGGCGTGAAGAAGGAGGAGGTGAAGGTGGAGGTGGAGGA CGGGAACGTGCTCGTCGTCAGCGGCGAGCGCACTAAGGAGAAGGAGGACAAGAATGATAA GTGGCACCGTGTGGAGCGCAGCAGCGGCAGGTTTGTGAGGCGCTTCCGCCTGCCGGAGGA CGCCAAGGTGGAGGAGGTGAAGGCTGGGCTGGAGAACGGTGTGCTCACCGTCACCGTACC CAAGGCCGAGGTGAAGAAGCCTGAGGTGAAGGCCATCGAGATCTCCGGCTGAGTATTTGG GTCGGAGCTAGCCTGGTCGATGTGTGTGTGAGCTCTGCAACCTAAATACAGTTGTGTCTT TGTTCTTGTCGAGTCTGGTTGAGACATCTTTGTATCGCGTT
Homology of Contig U35_14863 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g04370.1 | 151 | 3e-62 | protein|hsp20/alpha crystallin family protein, putative, expressed |
| Brachypodium v1_2 | Bradi2g02400.1 | 155 | 2e-65 | |
| Arabidopsis v10 | None |