barSeed - Barley Seed Development Database

Probe CUST_21202_PI390587928

Source Contig U35_14857

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21202_PI390587928	Hv_44K_v2	TATGTAATCGCCAACAGGTGAATAATAAATGAGAAATAAAGTGTGCTGATTTTGGGTGCC	386	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.012	0.024	0.460	1.561	2.424	4.083
Raw	87.708	449.974	7458.797	35825.033	20347.933	38095.067

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44536.1	956	6e-24	95 - 153	100	59 / 59	minus	ABC02002 ABC02004 ABC02007 ABC02008 ABC02014 ABC31513
JLOC1	JLOC1_28870.1	852	3e-24	92 - 150	100	59 / 59	minus
Harvest21	ABC02016	775	1e-24	699 - 757	100	59 / 59	plus
Harvest21	ABC02007	770	1e-24	695 - 753	100	59 / 59	plus	ABC02007
Harvest35	U35_14857	464	3e-25	387 - 446	100	60 / 60	plus
Harvest35	U35_14869	777	1e-24	701 - 759	100	59 / 59	plus

Contig Sequence (464 bp)

>U35_14857 464 Hv_44K_v2
GGCAACGTGCTCGTTGTCAGCGGCGAGCGCACTAAGGAGGAGGAGGACAAGAACGACAAG
TGGCACCGTGTGGAGCGTAGCAGCGGCAAGTTCGTGCGGCGCTTCCGCTTGCCGGAGGAC
GCCAAGGTGGAGGAGGTGAAGGCCGGCCTGGAGAACGGTGTGCTCACTGTCACCGTGCCC
AAGGCCGAGGTCAAGAAGCCTGAGGTGAAGGCCATCGAGATCTCCGGCTGAATGCATGCG
CCTCGACGTATACTCTGGTTGGAGCGAGTTTGGTTGATGTGTGCGAGTTCTGCAACCTGA
AACTATGCTACAGTTGTGTCGTTGTTCTTGCCGAGTCTAGAGAGAAATCTCTGTATTGTG
TTTCTTTCCCCAGTCGTTTCGGTACTTATGTAATCGCCAACAGGTGAATAATAAATGAGA
AATAAAGTGTGCTGATTTTGGGTGCCNAAAAAAAAAAAAAAAAA

Homology of Contig U35_14857 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None