barSeed - Barley Seed Development Database

Probe ABC00555

Source Contig ABC00555

barSeed

Links

Affymetrix Source Sequence (817 bp)

>ABC00555 817
GCTGCCGTACTGGTTCTCGGCGATGACCATGCGGAGCGTGGGGAGCGCGGCGCTGGCGAT
GGTGGAGGAGGTGCGGCGGCAGTTCGACAGCATCCCGGGGCTGATGGAGGGCACGGCGAA
GCCGGACTACGCCACCTGCGTGAAGATCTCCACCGACGCGTCGCTCAAGAAGATGCTGGC
GCCCGGCGCGCTCGTCATGCTGAGCCCGCTGGTCGCCGGCACGCTGTTCGGCACCGAGAC
GCTGGCCGGGCTCCTCGCCGGCGCGCTGGTGTCGGGGGTCCAGGTGGCGATCTCGGCGTC
CAACAGCGGCGGCGCGTGGGACAACGCCAAGAAGTACATCGAGGCCGGCGCGTCAGCGGA
GGCGCGGGCGCTGGGGCCCAAGGGGTCGGACGCGCACAAGGCGGCCGTGATCGGCGACAC
CATCGGAGACCCGCTCAAGGACACCTCCGGCCCGTCGCTCAACATCCTCATCAAGCTCAT
GGCCGTCGAGGCGCTCGTCTTCGCGCCATTCTTCGCGGCGCACGGCGGCCTCATCTTCAA
GCACCTCTGAGTTTGAATTCCGGGTTCGCGCGTCTTGCTGCCTGGACCTGGATGACCAAG
CAGAAGACTTTCGTTACCAATAATAATCTCTAGACTGGGAAAATTGTATGAGGTGATGAA
TGGTTAATGGTTATTTAGTTTCGGACTTAATTCGAGTGCAAAACCCGCGTTAGAAAGAAA
TCAAACTCGTGGTGTTGCAAATGTTACTCTTAAGGCATGACTTCTAAATGCACCATTGAT
TGTATTAATCTTGCTTCTTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_40114.2	1095	0.0	175 - 976	99	800 / 802	CUST_5020_PI390587928 CUST_5017_PI390587928	ABC00078 ABC00225 ABC00555 ABC00840
AK375042	2615	0.0	1851 - 2615	100	765 / 765	CUST_16811_PI390587928 CUST_5017_PI390587928 CUST_39752_PI390587928	ABC00078 ABC00225 ABC00555 ABC00840
MLOC_40114.1	752	2e-69	175 - 320	99	145 / 146	CUST_5017_PI390587928	ABC00078 ABC00225 ABC00555 ABC00840
MLOC_39134.1	2597	6e-145	184 - 717	84	451 / 536	CUST_42213_PI390587928 CUST_11606_PI390587928	ABC00078 ABC00225 ABC00385 ABC00555 ABC00840
AK250247.1	2791	1e-92	1846 - 2397	78	433 / 555	CUST_5016_PI390587928 CUST_5014_PI390587928	ABC00385 ABC00555 ABC00840 ABC42711
AK248511.1	3037	1e-92	1841 - 2392	78	433 / 555	CUST_9014_PI390587928 CUST_9015_PI390587928 CUST_9013_PI390587928	ABC00004 ABC00005 ABC00225 ABC00385 ABC00555 ABC00840 ABC52633 ABC52692 ABC52775
MLOC_36965.2	1155	1e-92	309 - 860	78	433 / 555	None	ABC00385 ABC00555 ABC00840 ABC42711
MLOC_6480.3	3179	1e-86	425 - 940	78	404 / 518	CUST_5018_PI390587928	ABC00385 ABC00555 ABC00840 ABC37597
MLOC_6480.2	2881	1e-86	437 - 952	78	404 / 518	CUST_5018_PI390587928	ABC00385 ABC00555 ABC00840 ABC37597
MLOC_6480.1	3356	1e-86	442 - 957	78	404 / 518	CUST_5018_PI390587928	ABC00385 ABC00555 ABC00840 ABC37597
AK360389	2798	7e-85	1882 - 2397	78	403 / 518	CUST_5018_PI390587928 CUST_14976_PI390587928	ABC00385 ABC00555 ABC00840 ABC37597