- Probe CUST_16811_PI390587928
- Source Contig U35_47354
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16811_PI390587928 | Hv_44K_v2 | ATTTCGCGGCCATGATGTACCCGCTGCTCATCAGCGCCATGGGCATCGTGGTGTGCTTGG | 437 | GeneList: floralwhite MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.048 | 0.141 | 1.931 | 2.667 | 1.100 | 1.264 |
| Raw | 12.462 | 60.967 | 738.506 | 1583.827 | 244.386 | 295.261 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK375042 | 2615 | 2e-24 | 1058 - 1117 | 100 | 60 / 60 | plus | ABC00078 ABC00225 ABC00555 ABC00840 |
| MLOC | MLOC_71878.3 | 2568 | 2e-24 | 1599 - 1658 | 100 | 60 / 60 | plus | ABC00078 |
| MLOC | MLOC_71878.1 | 1987 | 2e-24 | 1289 - 1348 | 100 | 60 / 60 | plus | ABC00078 |
| MLOC | MLOC_71878.2 | 2192 | 2e-24 | 1494 - 1553 | 100 | 60 / 60 | plus | ABC00078 |
| JLOC1 | JLOC1_47789.4 | 1896 | 8e-25 | 1194 - 1253 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_47789.3 | 2084 | 8e-25 | 1382 - 1441 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_47789.2 | 1696 | 8e-25 | 994 - 1053 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_47789.1 | 1864 | 8e-25 | 1162 - 1221 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC48338 | 518 | 3e-25 | 438 - 497 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_47354 | 518 | 3e-25 | 438 - 497 | 100 | 60 / 60 | plus |
Contig Sequence (518 bp)
>U35_47354 518 Hv_44K_v2 CTCGCTGCGTACGGGGGAGCGCGCCTTCGTCGTCGCGTTCCGGTCCGGCGCCGCCATGGG CTTCCTCCTCGCGTCCAGCGCGTTGTTCGTCCTCTACGTCGCCATCAACCTCTTCGGCGT CTACTACGGCGACGACTGGGGCGGGCTCTACGAGTCCATCACCGGCTACGGCCTCGGCGG CTCGTCCATGGCCCTCTTCGGCCGCGTCGGCGGCGGCATCTACACCAAGGCCGCCGACGT CGGCGCCGACCTCGTCGGCAAGGTGGAGCGCAACATCCCCGAGGATGACCCTCGCAACCC CGCGGTGATCGCTGACAACGTGGGGGACAACGTCGGCGACATCGCCGGGATGGGGTCGGA CCTGTTCGGGTCGTACGCGGAGTCGTCGTGCGCGGCGCTGTTCGTGGCGTCCATCTCGTC GTTCGGGACGGAGCACAATTTCGCGGCCATGATGTACCCGCTGCTCATCAGCGCCATGGG CATCGTGGTGTGCTTGGCCACCACGGTCGTCGCCACCG
Homology of Contig U35_47354 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g06480.1 | 771 | 1e-98 | protein|inorganic H+ pyrophosphatase, putative, expressed |
| Brachypodium v1_2 | Bradi2g34930.1 | 782 | 7e-101 | |
| Arabidopsis v10 | AT1G15690.1 | 770 | 4e-92 | | Symbols: AVP1, ATAVP3, AVP-3, AtVHP1;1 | Inorganic H pyrophosphatase family protein | chr1:5399115-5402185 FORWARD LENGTH=770 |