- Probe CUST_9014_PI390587928
- Source Contig U35_14434
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9014_PI390587928 | Hv_44K_v2 | TGCATCTATGCCCATGTGTGATGTGTGTTAAATCGTAATAAAGAGCATCAGAGTATTTTC | 533 | GeneList: black MasterList: Pathogenesis_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.010 | 0.010 | 0.276 | 2.083 | 3.753 | 5.930 |
| Raw | 27.370 | 158.115 | 9332.323 | 95041.067 | 65097.967 | 113868.766 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK248511.1 | 3037 | 2e-24 | 2978 - 3037 | 100 | 60 / 60 | plus | ABC00004 ABC00005 ABC00225 ABC00385 ABC00555 ABC00840 ABC52633 ABC52692 ABC52775 |
| MLOC | MLOC_15578.1 | 735 | 2e-24 | 77 - 136 | 100 | 60 / 60 | minus | ABC00004 ABC00005 ABC00225 ABC52633 ABC52692 ABC52775 |
| JLOC1 | JLOC1_10698.1 | 683 | 8e-25 | 56 - 115 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC52674 | 341 | 3e-25 | 280 - 339 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC44899 | 435 | 3e-25 | 373 - 432 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00226 | 649 | 3e-25 | 569 - 628 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00225 | 843 | 3e-25 | 781 - 840 | 100 | 60 / 60 | plus | ABC00225 |
| Harvest21 | ABC00005 | 911 | 3e-25 | 831 - 890 | 100 | 60 / 60 | plus | ABC00005 |
| Harvest35 | U35_14435 | 440 | 3e-25 | 378 - 437 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14434 | 616 | 3e-25 | 534 - 593 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14433 | 610 | 3e-25 | 530 - 589 | 100 | 60 / 60 | plus |
Contig Sequence (616 bp)
>U35_14434 616 Hv_44K_v2 GCCCGTCTAAACGAAAACAATGGCGTTCAAGTACCAGCTCATCCTCTCGGCCGCCGTCAT GCTCGCCATTCTCGTCGCCACTGCCACCAGTTTCGGGGATTCGTGTGCTCCAGGGGATGC GTTGCCACACAACCCTCTCAGAGCCTGCCGCACCTACGTGGTCAGTCAAATCTGCCACCA AGGCCCCAGACTCCTCACCTCGGACATGAAGAGGCGGTGTTGCGACGAGTTGTCGGCCAT CCCGGCGTACTGCAGGTGCGAAGCGCTGCGTATCATCATGCAAGGGGTAGTAACTTGGCA GGGTGCGTTCGAGGGTGCCTACTTCAAGGACACGCCCAACTGCCCTAGGGAGAGGCAAAC GAGCTACGCCGCCAACCTCGTCACCCCGCAGGAGTGCAACCTATGGACCATCCACGGCAG CCCGTCCTGCCCCGAACTGCAGCCCGGATATGGAGTGGTCTCGTCATAAGTTATAACGAC TAGCTCGATCATGAATAAGCATGGTGCATCGATCAATGGACCAATCGATTGTATGCATCT ATGCCCATGTGTGATGTGTGTTAAATCGTAATAAAGAGCATCAGAGTATTTTCAAAAAAA AAAAAAAAAAAAAAAA
Homology of Contig U35_14434 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |