- Probe CUST_9015_PI390587928
- Source Contig U35_14433
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9015_PI390587928 | Hv_44K_v2 | TGCATCTATGCCCATGTGTGATGTGTGTTAAATCGTAATAAAGAGCATCAGAGTATTTTC | 529 | GeneList: lightgreen MasterList: Pathogenesis_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.010 | 0.010 | 0.283 | 2.279 | 4.075 | 6.056 |
| Raw | 28.077 | 169.880 | 9682.377 | 107953.800 | 71881.400 | 117805.400 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK248511.1 | 3037 | 2e-24 | 2978 - 3037 | 100 | 60 / 60 | plus | ABC00004 ABC00005 ABC00225 ABC00385 ABC00555 ABC00840 ABC52633 ABC52692 ABC52775 |
| MLOC | MLOC_15578.1 | 735 | 2e-24 | 77 - 136 | 100 | 60 / 60 | minus | ABC00004 ABC00005 ABC00225 ABC52633 ABC52692 ABC52775 |
| JLOC1 | JLOC1_10698.1 | 683 | 8e-25 | 56 - 115 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC52674 | 341 | 3e-25 | 280 - 339 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC44899 | 435 | 3e-25 | 373 - 432 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00226 | 649 | 3e-25 | 569 - 628 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00225 | 843 | 3e-25 | 781 - 840 | 100 | 60 / 60 | plus | ABC00225 |
| Harvest21 | ABC00005 | 911 | 3e-25 | 831 - 890 | 100 | 60 / 60 | plus | ABC00005 |
| Harvest35 | U35_14435 | 440 | 3e-25 | 378 - 437 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14434 | 616 | 3e-25 | 534 - 593 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14433 | 610 | 3e-25 | 530 - 589 | 100 | 60 / 60 | plus |
Contig Sequence (610 bp)
>U35_14433 610 Hv_44K_v2 TTCAATTTGATAACAATGGCGTTCAAGTACCAGCTCCTCCTGTCGGCCGCCGTCATGCTC GCCATTCTCGTCGCCACTGCCACCAGTTTCGGGGATTCGTGTGCTCCAGGGGATGCGTTG CCACACAACCCTCTCAGAGCCTGCCGCACCTACGTGGTCAGTCAAATCTGCCACCAAGGC CCCAGACTCCTCACCTCGGACATGAAGAGGCGGTGTTGCGACGAGCTGTCGGCCATCCCG GCGTACTGTAGGTGCGAAGCGCTGCGTATCATCATGCAAGGGGTAGTAACTTGGCAGGGT GCGTTCGAGGGTGCCTACTTCAAGGACTCGCCCAACTGCCCTAGGGAGAGGCAAACGAGC TACGCCGCCAACCTCGTCACCCCGCAGGAGTGCAACCTAGGGACCATCCACGGCAGCGCG TACTGCCCCGAACTGCAGCCCGGATATGGAGTGGTCTTGTAATAAGTTCTAACGACTAGC TCGATCATGAATAAGCATGGTGCATCGATCAATGGACCAATCGATTGTATGCATCTATGC CCATGTGTGATGTGTGTTAAATCGTAATAAAGAGCATCAGAGTATTTTCAAAAAAAAAAA AAAAAAAAAA
Homology of Contig U35_14433 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |