- Probe CUST_5014_PI390587928
- Source Contig U35_538
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5014_PI390587928 | Hv_44K_v2 | GACGATAATGTTTGAACCCACCCTTGAACAATGATATCATGATGATTGCTGTATCAAAAA | 578 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.601 | 2.028 | 1.253 | 0.652 | 0.269 | 0.225 |
| Raw | 13500.733 | 15936.350 | 8944.497 | 7456.847 | 1027.537 | 954.230 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK250247.1 | 2791 | 3e-22 | 2678 - 2733 | 100 | 56 / 56 | plus | ABC00385 ABC00555 ABC00840 ABC42711 |
| MLOC | MLOC_36965.1 | 2659 | 3e-22 | 1089 - 1144 | 100 | 56 / 56 | minus | ABC00385 ABC00840 ABC42711 |
| MLOC | MLOC_36964.1 | 3433 | 3e-22 | 1863 - 1918 | 100 | 56 / 56 | minus | ABC00385 ABC00840 ABC10851 ABC42711 |
| JLOC1 | JLOC1_23869.1 | 2065 | 1e-22 | 1138 - 1193 | 100 | 56 / 56 | plus | |
| JLOC1 | JLOC1_23868.1 | 2419 | 1e-22 | 1863 - 1918 | 100 | 56 / 56 | minus | |
| Harvest21 | ABC00353 | 2774 | 3e-25 | 2665 - 2724 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC42711 | 330 | 5e-23 | 29 - 84 | 100 | 56 / 56 | minus | ABC42711 |
| Harvest21 | ABC00007 | 2712 | 5e-23 | 2606 - 2661 | 100 | 56 / 56 | plus | |
| Harvest21 | ABC00840 | 759 | 6e-22 | 2 - 61 | 97 | 58 / 60 | minus | ABC00840 |
| Harvest21 | ABC41673 | 272 | 2e-21 | 29 - 84 | 98 | 55 / 56 | minus | |
| Harvest35 | U35_538 | 692 | 3e-25 | 579 - 638 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_536 | 2805 | 3e-25 | 2707 - 2766 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_537 | 864 | 1e-23 | 567 - 627 | 98 | 60 / 61 | plus |
Contig Sequence (692 bp)
>U35_538 692 Hv_44K_v2 TGGCTGGTGCCCTCGTTTCTGGAGTGCAGATCGCCATCTCTGCTTCCAACACCGGTGGTG CATGGGACAACGCAAAGAAGTACATCGAGGCCGGCAACAGCGAGCATGCGAGGTCCCTTG GTCCCAAGGGTTCAGACTGCCACAAGGCCGCCGTGATCGGTGACACCATCGGAGACCCCC TCAAGGACACCTCAGGCCCGTCGCTCAACATCCTCATCAAGCTCATGGCCGTTGAGTCCC TCGTGTTCGCGCCCTTCTTCGCCACGTACGGAGGTCTGCTGTTCAAGTACATCTAGAGGA CTCGAGTCGAGCGATGATCTACAGACACTGTCACGAATAACTCCCCCGCCTGCCTGCCCG CCCGCCTTCGTACGTTGTGCGCTGCTGTTATTTTTGGTTGTCAATGTCATTCCAGGATTG CCGCGGTTACCTACCCCCCTTTCCCCTGGCCTCTTGAAGGCGTTATGTTAGTCTCACCAT TACATTACCGGCTTGTAGCTCCATGTAGTAGAAGAGAGAGACCAGATGTCCTCCCTCGTT GGTATGTGCCTGGCAAATTTTCCTCGTCCCATGATGACGACGATAATGTTTGAACCCACC CTTGAACAATGATATCATGATGATTGCTGTATCAAAAAAAAAAAAAAAAATCTCATCTTA GTTCTTGCTTGTTCAAAAAAAAAAAAAAAAAA
Homology of Contig U35_538 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g08080.1 | 768 | 1e-53 | protein|inorganic H+ pyrophosphatase, putative, expressed |
| Brachypodium v1_2 | Bradi1g47767.1 | 763 | 5e-56 | |
| Arabidopsis v10 | AT1G15690.1 | 770 | 1e-51 | | Symbols: AVP1, ATAVP3, AVP-3, AtVHP1;1 | Inorganic H pyrophosphatase family protein | chr1:5399115-5402185 FORWARD LENGTH=770 |