barSeed - Barley Seed Development Database

Probe CUST_42213_PI390587928

Source Contig U35_48750

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42213_PI390587928	Hv_44K_v2	CCCTTGTGACATTATCGCTTAATTAGTACGTATAATGCTGAGTTTACTGGTTTTCAAGAA	15	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	9.738	4.908	1.542	0.459	0.358	0.312
Raw	193.265	152.227	42.188	20.148	3.642	2.726

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39134.1	2597	2e-24	8 - 67	100	60 / 60	minus	ABC00078 ABC00225 ABC00385 ABC00555 ABC00840
Harvest35	U35_48750	468	3e-25	16 - 75	100	60 / 60	minus

Contig Sequence (468 bp)

>U35_48750 468 Hv_44K_v2
TTTTTTTTTTTTTTTTTCTTGAAAACCAGTAAACTCAGCATTATACGTACTAATTAAGCG
ATAATGTCACAAGGGCAGTGCAGTTTTCGGGGTTGACCTAAGCCTCTACTATTCCACATC
AATCCTAGCATATGATATTCTCAAACCAGACATTCATGTATATCTCCCTGCAATATTTGT
ATCAGTTGATTATGAGGCCTCCATGCGCCGCGAAGAATGGCGCGAAGACAAGGGACTCGA
CGGCCATGAGCTTGATGAGGATGTTGAGCGACGGGCCAGACGTATCCTTGAGCGGGTCCC
CGATGGTGTCACCGATCACGGCGGCCTTGTGCGCCTCCGAGCCCTTGGGACCCAGGGACT
TGGCGTGCTCCGACGCACCCGCCTCGATGTACTTCTTGGCGTTGTCCCAGGCTCCCCCGC
TGTTGGAAGCCGATATGGCCACCTGCACGCCGGAAACGAGCGCGCCAG

Homology of Contig U35_48750 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g23580.1	774	3e-52	protein\|inorganic H+ pyrophosphatase, putative, expressed
Brachypodium v1_2	Bradi2g12540.1	776	2e-52
Arabidopsis v10	None