- Probe CUST_9013_PI390587928
- Source Contig U35_14435
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9013_PI390587928 | Hv_44K_v2 | ATCTATGCCCATGTGTGATGTGTGTTAAATCGTAATAAAGAGCATCAGAGTATTTTCAGT | 380 | GeneList: black MasterList: Pathogenesis_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.010 | 0.010 | 0.276 | 2.124 | 3.887 | 5.888 |
| Raw | 25.600 | 139.975 | 8241.300 | 87884.367 | 59442.567 | 100296.133 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_15578.1 | 735 | 2e-24 | 74 - 133 | 100 | 60 / 60 | minus | ABC00004 ABC00005 ABC00225 ABC52633 ABC52692 ABC52775 |
| MLOC | AK248511.1 | 3037 | 7e-23 | 2981 - 3037 | 100 | 57 / 57 | plus | ABC00004 ABC00005 ABC00225 ABC00385 ABC00555 ABC00840 ABC52633 ABC52692 ABC52775 |
| JLOC1 | JLOC1_10698.1 | 683 | 8e-25 | 53 - 112 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC44899 | 435 | 3e-25 | 376 - 435 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00225 | 843 | 3e-25 | 784 - 843 | 100 | 60 / 60 | plus | ABC00225 |
| Harvest21 | ABC52674 | 341 | 4e-24 | 283 - 340 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC00226 | 649 | 4e-24 | 572 - 629 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC00005 | 911 | 4e-24 | 834 - 891 | 100 | 58 / 58 | plus | ABC00005 |
| Harvest35 | U35_14435 | 440 | 3e-25 | 381 - 440 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14434 | 616 | 4e-24 | 537 - 594 | 100 | 58 / 58 | plus | |
| Harvest35 | U35_14433 | 610 | 4e-24 | 533 - 590 | 100 | 58 / 58 | plus |
Contig Sequence (440 bp)
>U35_14435 440 Hv_44K_v2 GGGATTCGTGTGCTCCAGGGGATGCGTTGCCACACAACCCTCTCAGAGCCTGCCGCACCT ACGTGGTCAGTCAAATCTGCCACCAAGGCCCCAGACTCCTCACCTCGGACATGAAGAGGC GGTGTTGCGACGAGTTGTCGGCCATCCCGGCGTACTGCAGGTGCGAAGCGCTGCGTATCA TCATGCAAGGGGTAGTAACTTGGCAGGGTGCGTTCGAGGGTGCCTACTTCAAGGACACGC CCAACTGCCCTAGGGAGAGGCAAACGAGCTACGCCGCCAACCTCGTCACCCCGCAGGAGT GGTCTCGTCATAAGTTATAACGACTAGCTCGATCATGAATAAGCATGGTGCATCGATCAA TGGACCAATCGATTGTATGCATCTATGCCCATGTGTGATGTGTGTTAAATCGTAATAAAG AGCATCAGAGTATTTTCAGT
Homology of Contig U35_14435 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |