barSeed - Barley Seed Development Database

Probe CUST_5016_PI390587928

Source Contig U35_536

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5016_PI390587928	Hv_44K_v2	ATGACGACGATAATGTTTGAACCCACCCTTGAACAATGATATCATGATGATTGCTGTATC	2701	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.599	2.233	1.317	0.741	0.298	0.244
Raw	12851.323	16471.950	8988.230	8159.083	1085.716	980.599

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250247.1	2791	2e-24	2673 - 2732	100	60 / 60	plus	ABC00385 ABC00555 ABC00840 ABC42711
MLOC	MLOC_36965.1	2659	2e-24	1090 - 1149	100	60 / 60	minus	ABC00385 ABC00840 ABC42711
MLOC	MLOC_36964.1	3433	2e-24	1864 - 1923	100	60 / 60	minus	ABC00385 ABC00840 ABC10851 ABC42711
JLOC1	JLOC1_23869.1	2065	8e-25	1133 - 1192	100	60 / 60	plus
JLOC1	JLOC1_23868.1	2419	8e-25	1864 - 1923	100	60 / 60	minus
Harvest21	ABC42711	330	3e-25	30 - 89	100	60 / 60	minus	ABC42711
Harvest21	ABC00353	2774	3e-25	2660 - 2719	100	60 / 60	plus
Harvest21	ABC00007	2712	3e-25	2601 - 2660	100	60 / 60	plus
Harvest21	ABC00840	759	4e-24	9 - 66	100	58 / 58	minus	ABC00840
Harvest21	ABC41673	272	1e-23	30 - 89	98	59 / 60	minus
Harvest35	U35_538	692	3e-25	574 - 633	100	60 / 60	plus
Harvest35	U35_537	864	3e-25	562 - 621	100	60 / 60	plus
Harvest35	U35_536	2805	3e-25	2702 - 2761	100	60 / 60	plus

Contig Sequence (2805 bp)

>U35_536 2805 Hv_44K_v2
CGGTCCGGAATTCCTTTATACTGTTGGCCTAACACAGAGAGAGCGAGAGACCCGTCCGTC
CCCCCTCATCCCACCCCGCCCGCCGCCGTCCGGTCCGTCGTTAGGGTTTCGTCGGCCTGC
CAGCCTGACAGCCATGGCGATCCTCGGGGAGCTCGGGACGGAGATCCTCATCCCCGTCTG
CGGGGTCATCGGCATCGTCTTCGCCGTCGCGCAGTGGTTCATCGTCTCCAAGGTCAAGGT
CACCCCAGGCGCCGCCTCCGCCGCCGCCGGCGCCAAGAACGGCTACGGCGACTACCTCAT
CGAGGAGGAGGAGGGCCTCAACGACCACAACGTCGTCGTCAAGTGCGCCGAGATCCAGAC
CGCCATCTCTGAAGGGGCAACATCATTCCTTTTCACCATGTACCAGTACGTTGGTATGTT
CATGGTTGTCTTTGCTGCGATTATCTTCCTCTTCCTTGGATCGATCGAGGGATTCAGCAC
AAAGGGCCAGCCCTGCACCTACAGCAAGGGCACCTGCAAGCCAGCCCTATACACTGCTCT
CTTTAGCACTGCATCTTTCTTGCTTGGAGCCATCACATCTCTGGTGTCTGGTTTCCTTGG
AATGAAGATCGCCACATATGCCAATGCCAGGACGACCCTTGAAGCAAGGAAGGGTGTTGG
GAAGGCATTTATCACCGCTTTCCGCTCTGGTGCAGTCATGGGCTTCTTGTTGTCATCAAG
TGGTCTTGTGGTTCTTTACATCACCATCAACGTGTTTAAGATGTACTACGGTGATGACTG
GGAAGGTCTTTTCGAGTCCATCACTGGTTATGGTCTTGGTGGGTCTTCCATGGCTCTATT
CGGAAGAGTTGGTGGAGGTATCTACACTAAGGCTGCTGACGTGGGTGCTGACCTTGTTGG
CAAAGTTGAGAGGAACATTCCTGAAGATGACCCAAGGAACCCAGCTGTGATTGCTGACAA
CGTCGGTGACAACGTTGGTGATATTGCTGGAATGGGATCAGATCTCTTTGGTTCATACGC
AGAATCTTCCTGCGCTGCTCTTGTTGTTGCTTCCATCTCATCTTTTGGAATCAACCATGA
TTTCACTGCGATGTGCTACCCACTGCTCGTGAGCTCTGTAGGCATCATTGTTTGCTTGCT
CACCACACTCTTTGCAACTGATTTCTTTGAGATTAAGGCTGCAAACGAAATTGAACCTGC
TCTGAAGAAGCAGCTCATCATCTCCACTGCTCTAATGACTGTTGGTGTTGCGGTCATCAG
CTGGTTGGCTCTTCCAGCTAAGTTCACCATCTTCAACTTCGGTGCTCAGAAGGAAGTGTC
CAACTGGGGCCTGTTCTTCTGCGTGGCAGTTGGTCTGTGGGCTGGTCTGATTATTGGATT
TGTGACTGAATACTACACTAGCAACGCCTACAGCCCTGTGCAAGATGTTGCCGATTCCTG
CAGAACTGGTGCTGCCACCAACGTCATCTTCGGTCTTGCTCTGGGGTACAAGTCTGTTAT
CATCCCAATTTTCGCTATTGCTGTCAGCATCTACGTCAGCTTCTCCATTGCTGCAATGTA
CGGCATTGCAATGGCTGCTCTTGGCATGCTAAGCACAATGGCAACTGGTCTTGCCATCGA
TGCTTATGGTCCCATTAGTGACAATGCTGGTGGAATTGCTGAGATGGCTGGCATGAGCCA
CAGAATCCGTGAGAGGACTGATGCTCTTGATGCTGCTGGCAACACAACCGCTGCTATTGG
GAAGGGTTTCGCCATTGGATCAGCTGCTCTCGTGTCCCTGGCACTTTTCGGTGCCTTTGT
CAGCAGAGCTGGTGTGAAGGTCGTTGATGTCCTATCTCCCAAGGTGTTCATTGGTCTGAT
TGTCGGAGCCATGCTTCCGTACTGGTTCTCTGCCATGACCATGAAGAGTGTTGGAAGTGC
TGCCCTCAAGATGGTTGAGGAGGTCCGCAGGCAGTTCAACACCATTCCTGGACTGATGGA
GGGAACTGCCAAGCCTGACTATGCCACCTGTGTCAAGATCTCCACTGATGCTTCCATCAA
GGAGATGATCCCTCCGGGTGCTTTGGTCATGCTCACCCCCCTCATTGTTGGAACCCTCTT
TGGCGTGGAAACCCTGTCTGGTGTTCTGGCTGGTGCCCTCGTTTCTGGAGTGCAGATCGC
CATCTCTGCTTCCAACACCGGTGGTGCATGGGACAACGCAAAGAAGTACATCGAGGCCGG
CAACAGCGAGCATGCGAGGTCCCTTGGTCCCAAGGGTTCAGACTGCCACAAGGCCGCCGT
GATCGGTGACACCATCGGAGACCCCCTCAAGGACACCTCAGGCCCGTCGCTCAACATCCT
CATCAAGCTCATGGCCGTTGAGTCCCTCGTGTTCGCGCCCTTCTTCGCCACGTACGGAGG
TCTGCTGTTCAAGTACATCTAGAGGACTCGTGATGAGTCGAGCGATGATCTACAGACACT
GTCACGAATAACTCCCCCGCCTGCCTGCCCGCCGTTCGTACGTTGTGCGCTGCTGTTATT
TTTGGTTGTCAATGTCATTCCAGGATTGCCGCGGTTACCTACCCCCCTTTCCCCTGGCCT
CTTGAAGGCGTTATGTTAGTCTCACCATTACATTACCGGCTTGTAGCTCCATGTAGTAGA
AGAGAGAGACCAGATGTCCTCCCTCGTTGGTATGTGTCTGGCAAATTTTCCTCGTCCCAT
GATGACGACGATAATGTTTGAACCCACCCTTGAACAATGATATCATGATGATTGCTGTAT
CAAAAAAAAAAAAAAAAATCTCATCTTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_536 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g08080.1	768	protein\|inorganic H+ pyrophosphatase, putative, expressed
Brachypodium v1_2	Bradi1g47767.1	763
Arabidopsis v10	AT1G15690.1	770	\| Symbols: AVP1, ATAVP3, AVP-3, AtVHP1;1 \| Inorganic H pyrophosphatase family protein \| chr1:5399115-5402185 FORWARD LENGTH=770