Gene Data
Barley RTD
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Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u5672999.3--4951837Partial-Overlap




Transcripts from Gene HORVU7Hr1G115180

TranscriptLength(bp)Description
HORVU7Hr1G115180.15189gene=HORVU7Hr1G115180 CDS=304-1344
HORVU7Hr1G115180.22506gene=HORVU7Hr1G115180 CDS=202-2097
HORVU7Hr1G115180.32448gene=HORVU7Hr1G115180 CDS=162-2057
HORVU7Hr1G115180.42468gene=HORVU7Hr1G115180 CDS=3-2087
HORVU7Hr1G115180.52652gene=HORVU7Hr1G115180 CDS=257-2281
HORVU7Hr1G115180.62512gene=HORVU7Hr1G115180 CDS=297-2192
HORVU7Hr1G115180.72399gene=HORVU7Hr1G115180 CDS=1-2088
HORVU7Hr1G115180.8733gene=HORVU7Hr1G115180 CDS=1-447
HORVU7Hr1G115180.92375gene=HORVU7Hr1G115180 CDS=224-2119
HORVU7Hr1G115180.102331gene=HORVU7Hr1G115180 CDS=188-2083
HORVU7Hr1G115180.112312gene=HORVU7Hr1G115180 CDS=3-2084
HORVU7Hr1G115180.122224gene=HORVU7Hr1G115180 CDS=202-1356
HORVU7Hr1G115180.131394gene=HORVU7Hr1G115180 CDS=1-1392
HORVU7Hr1G115180.141680gene=HORVU7Hr1G115180 CDS=1-1680



Exon Structure of HORVU7Hr1G115180


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os01g44230.2 +1 2e-153 482 245/382 (64%) protein|transcription factor X1, putative, expressed
TAIR PP10 AT3G48670 @ ARAPORT
AT3G48670.2 @ TAIR		 +1 5e-57 211 116/284 (41%) Symbols: IDN2, RDM12 | XH/XS domain-containing protein | chr3:18031240-18033615 FORWARD LENGTH=647
BRACH PP3 Bradi2g44450.1.p +1 7e-167 521 273/382 (71%) pacid=32771749 transcript=Bradi2g44450.1 locus=Bradi2g44450 ID=Bradi2g44450.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons