- Transcript HORVU7Hr1G115180.3
- Transcript IDHORVU7Hr1G115180.3
- Gene IDHORVU7Hr1G115180
Barley RTD
Exon Structure of HORVU7Hr1G115180.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 640933304 | 640932692 | - |
| chr7H | 2 | 640933929 | 640933717 | - |
| chr7H | 3 | 640934346 | 640934059 | - |
| chr7H | 4 | 640934528 | 640934439 | - |
| chr7H | 5 | 640934999 | 640934818 | - |
| chr7H | 6 | 640936071 | 640935126 | - |
| chr7H | 7 | 640936418 | 640936303 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g44230.1 | +3 | 0.0 | 874 | 446/614 (73%) | protein|transcription factor X1, putative, expressed |
| TAIR PP10 | AT3G48670 @ ARAPORT AT3G48670.2 @ TAIR |
+3 | 2e-139 | 427 | 245/621 (39%) | Symbols: IDN2, RDM12 | XH/XS domain-containing protein | chr3:18031240-18033615 FORWARD LENGTH=647 |
| BRACH PP3 | Bradi2g44450.1.p | +3 | 0.0 | 952 | 496/614 (81%) | pacid=32771749 transcript=Bradi2g44450.1 locus=Bradi2g44450 ID=Bradi2g44450.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2448 bp)
>HORVU7Hr1G115180.3 2448 150831_barley_pseudomolecules CACCACCATTCCCCTCCCCCCTCACTCCCGCAGGACCCTAGCCGCCGCCGCCGCCGCCGC CCCCCACCAGCCGGGCTTCTTCTCCTCCTCCCCGACCCCGGGTTCCTTCTCTGCCTCTGT TTCCGGCAGGTTGTCAAAAAAAAAAAAAATCCTTCTCGGAGATGGAATACAGCTCAGACG ACGATTCGGATATCAGCGACTCCGAGATCGACGAGTACGAAGGCAAGATTAACGCCCGTC TGATTTCAGGAGACTTAAAGTTCAGGAATGGCGATAGCTACGGTTGCCCATTCTGCACTG GCAAGAAGAACAAAGGTTACAACATGCAGAGCCTTCTTCAGCATTCCTCGGGGGTAGGCG CAGCGCCTAATCGGCCGGCAAAAGATAAAGCGTCGCACCGCGCCCTCGCCAAGCATTTGA AGAATGACGTTGCTAAACCTTCTGAGCCACAGCAACAGCAGCCGCAGCAGATTGTTGTGG AGCCGCAGCCTCTTCCAAACAGACATGAGAAGTTTGTGTGGCCCTGGATGGGTGTTCTAG TTAATGTACCTACTGAATGGAAGGACGGGCGTCAGGTTGGAGAAAGTGGTACTCGTTTGA AGGGGGAGCTGTCGCAATTTTGCCCGCTGAAGGTTATTCCTCTATGGAATTTCCGAGGCC ATACAGGGAATGCTATTGTTGAGTTTGCAAAAGACTGGAATGGTTTCAGAAATGCACTTG CATTTGAACAGTACTTTGAGGCAGGCGGCTGTGGCAGAAGGGACTGGAAGCAAAACCAGA ATCAGGGGTCAAAGCTTTTTGGATGGGTTGCAAGGGCTGAAGACTACAATCTTTCGGGGC TAATCGGGGACCACTTAAGGAAAAATGCTGACTTGAAAACTATCGATGACCTTGAGAATG AAGGAACACGCAAAAATAATAAACTTGTAGCTAATTTGGCTAACCAAATTGAGGTCAAGA ATAAGTATTTAGAGGAGCTTGAACTTAGATACAATGAGACAACTGCGTCACTTGAGAAGA TGATGGGGCAAAGGGAACAACGTCTCCAAGCGTATAATGAAGAAATTCGGAAGATGCAGC AGCTAGCTCGCAGACATTCTGAAAGAATTATTGATGAGAACCAAAATCTGCGTTCGGAAC TGGAGTCCAAGATGAGTGAACTTAATGAAAGATCCAAAGAGCTTGATGACCTTTCTGCAA AAAGTTCTCATGACAGAAGTAATCTTGAGCAGGAGAAGCAGAAGAATGCTATTAAATCAA ACCATCTTAAGTTGGCAACAGTGGAACAACAGAGAGCTAATGAGGATGTGGTGAAGCTTG TGAGAGATCAGAAGAGAGAGAAAGTTGCTGCATTAAACAAGATCCTGGAGTTAGAACAGC AGTTGGAGGCAAAACAGACGCTTGAACTGGAAATACAGCAGCTGAAGGGCAAATTGGAAG TGATGAAGCATATGCCAGGTCATGAAGATTCAGAGGCGAAGGATAAAATCAATCAACTTA GTGAGGAGCTGCAAGATAAGATGGATGAACTGGATGCTATGGAGTCACTTAACCAAACTC TGGTTATTAAAGAAAGCAAAAGCAATACTGAGATGCAAGAAGCTCGGAAGGAGCTGGAAA ATGGCTTGCTTAATCTTCCAGGCGGCGGAGCACATATAGGAATTAAGAGAATGGGCGAGC TTGATCTGAAAGCATTTTCAAATGCTCTCGGACAGAAGTTGTCGAAAGAGGAAGCAGAAG TTACTGCTGCCATTCTTTGTTCAAAGTGGGAAGCTGAAATTAGGAATCCAGAATGGCACC CTTTTAGGACTGTCATGGTTGACGGAAAGGAAGTGGAGAAAATCGATGCTGATGACACTA AGCTTCAAGAATTAAAAGATGAGCATGGCCAAGAAATCTATTCGTTGGTGACCAAGGCGC TGCGTGAGTACAACGCCAATAGCACCAGGTATCCCGTAGGAGAGCTGTGGAACTTCAGAG AAGAACGGAAGGCGTCTCTCAAGGAAGCCGTTCAGGTGGTCCTGAGGCAGTGGCGAACCA CCAGGAGGAAGCGTTGATTGAGCCCAACCAATGTCGATTCTTTCCTCCTCGTATGGACAT CGACATTAGCGGTGTGGTTTGATAAAATCTCTAGTGGCTATGTACGCCCATGTTGGATAT AAGTTGAATAATAAATAATCCTGTTGTTTCAGTAGTAGTAGCATTAGTGAAGTATCTATC CATCTGTGTAAACAAGCTTGAATAAAGACTTGGAGTAGTATCAGCACCTGCAAGCACGCT ATCAACCCGATCATCGGTGTCTGTTGGTAAGCGCCGCTGTATGCTTTGTTTCTGAGTTGC TGATAGTAATTCAGAGGAGTGTTTGTTTGTTGCCTGAATTAATGGTGACCTCCTGTACCA AGTATAGATACAGGAATGCATGAATTAGCACATCCACCTAAATACAAT