- Transcript HORVU7Hr1G115180.9
- Transcript IDHORVU7Hr1G115180.9
- Gene IDHORVU7Hr1G115180
Barley RTD
Exon Structure of HORVU7Hr1G115180.9
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 640933304 | 640932827 | - |
| chr7H | 2 | 640933929 | 640933717 | - |
| chr7H | 3 | 640934346 | 640934059 | - |
| chr7H | 4 | 640934528 | 640934439 | - |
| chr7H | 5 | 640934999 | 640934818 | - |
| chr7H | 6 | 640936081 | 640935126 | - |
| chr7H | 7 | 640936464 | 640936297 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g44230.1 | +2 | 0.0 | 874 | 446/614 (73%) | protein|transcription factor X1, putative, expressed |
| TAIR PP10 | AT3G48670 @ ARAPORT AT3G48670.2 @ TAIR |
+2 | 6e-140 | 427 | 245/621 (39%) | Symbols: IDN2, RDM12 | XH/XS domain-containing protein | chr3:18031240-18033615 FORWARD LENGTH=647 |
| BRACH PP3 | Bradi2g44450.1.p | +2 | 0.0 | 952 | 496/614 (81%) | pacid=32771749 transcript=Bradi2g44450.1 locus=Bradi2g44450 ID=Bradi2g44450.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2375 bp)
>HORVU7Hr1G115180.9 2375 150831_barley_pseudomolecules CTCCGGTTCGAGCAGGAGCAGGTAATCCCAGTCCCCTCCCGAGCTCCACCACCATTCCCC TCCCCCCTCACTCCCGCAGGACCCTAGCCGCCGCCGCCGCCGCCGCCCCCCACCAGCCGG GCTTCTTCTCCTCCTCCCCGACCCCGGGTTCCTTCTCTGCCTCGGCGATTCTCAGTCACT GTTTCCGGCAGGTTGTCAAAAAAAAAAAAAATCCTTCTCGGAGATGGAATACAGCTCAGA CGACGATTCGGATATCAGCGACTCCGAGATCGACGAGTACGAAGGCAAGATTAACGCCCG TCTGATTTCAGGAGACTTAAAGTTCAGGAATGGCGATAGCTACGGTTGCCCATTCTGCAC TGGCAAGAAGAACAAAGGTTACAACATGCAGAGCCTTCTTCAGCATTCCTCGGGGGTAGG CGCAGCGCCTAATCGGCCGGCAAAAGATAAAGCGTCGCACCGCGCCCTCGCCAAGCATTT GAAGAATGACGTTGCTAAACCTTCTGAGCCACAGCAACAGCAGCCGCAGCAGATTGTTGT GGAGCCGCAGCCTCTTCCAAACAGACATGAGAAGTTTGTGTGGCCCTGGATGGGTGTTCT AGTTAATGTACCTACTGAATGGAAGGACGGGCGTCAGGTTGGAGAAAGTGGTACTCGTTT GAAGGGGGAGCTGTCGCAATTTTGCCCGCTGAAGGTTATTCCTCTATGGAATTTCCGAGG CCATACAGGGAATGCTATTGTTGAGTTTGCAAAAGACTGGAATGGTTTCAGAAATGCACT TGCATTTGAACAGTACTTTGAGGCAGGCGGCTGTGGCAGAAGGGACTGGAAGCAAAACCA GAATCAGGGGTCAAAGCTTTTTGGATGGGTTGCAAGGGCTGAAGACTACAATCTTTCGGG GCTAATCGGGGACCACTTAAGGAAAAATGCTGACTTGAAAACTATCGATGACCTTGAGAA TGAAGGAACACGCAAAAATAATAAACTTGTAGCTAATTTGGCTAACCAAATTGAGGTCAA GAATAAGTATTTAGAGGAGCTTGAACTTAGATACAATGAGACAACTGCGTCACTTGAGAA GATGATGGGGCAAAGGGAACAACGTCTCCAAGCGTATAATGAAGAAATTCGGAAGATGCA GCAGCTAGCTCGCAGACATTCTGAAAGAATTATTGATGAGAACCAAAATCTGCGTTCGGA ACTGGAGTCCAAGATGAGTGAACTTAATGAAAGATCCAAAGAGCTTGATGACCTTTCTGC AAAAAGTTCTCATGACAGAAGTAATCTTGAGCAGGAGAAGCAGAAGAATGCTATTAAATC AAACCATCTTAAGTTGGCAACAGTGGAACAACAGAGAGCTAATGAGGATGTGGTGAAGCT TGTGAGAGATCAGAAGAGAGAGAAAGTTGCTGCATTAAACAAGATCCTGGAGTTAGAACA GCAGTTGGAGGCAAAACAGACGCTTGAACTGGAAATACAGCAGCTGAAGGGCAAATTGGA AGTGATGAAGCATATGCCAGGTCATGAAGATTCAGAGGCGAAGGATAAAATCAATCAACT TAGTGAGGAGCTGCAAGATAAGATGGATGAACTGGATGCTATGGAGTCACTTAACCAAAC TCTGGTTATTAAAGAAAGCAAAAGCAATACTGAGATGCAAGAAGCTCGGAAGGAGCTGGA AAATGGCTTGCTTAATCTTCCAGGCGGCGGAGCACATATAGGAATTAAGAGAATGGGCGA GCTTGATCTGAAAGCATTTTCAAATGCTCTCGGACAGAAGTTGTCGAAAGAGGAAGCAGA AGTTACTGCTGCCATTCTTTGTTCAAAGTGGGAAGCTGAAATTAGGAATCCAGAATGGCA CCCTTTTAGGACTGTCATGGTTGACGGAAAGGAAGTGGAGAAAATCGATGCTGATGACAC TAAGCTTCAAGAATTAAAAGATGAGCATGGCCAAGAAATCTATTCGTTGGTGACCAAGGC GCTGCGTGAGTACAACGCCAATAGCACCAGGTATCCCGTAGGAGAGCTGTGGAACTTCAG AGAAGAACGGAAGGCGTCTCTCAAGGAAGCCGTTCAGGTGGTCCTGAGGCAGTGGCGAAC CACCAGGAGGAAGCGTTGATTGAGCCCAACCAATGTCGATTCTTTCCTCCTCGTATGGAC ATCGACATTAGCGGTGTGGTTTGATAAAATCTCTAGTGGCTATGTACGCCCATGTTGGAT ATAAGTTGAATAATAAATAATCCTGTTGTTTCAGTAGTAGTAGCATTAGTGAAGTATCTA TCCATCTGTGTAAACAAGCTTGAATAAAGACTTGGAGTAGTATCAGCACCTGCAAGCACG CTATCAACCCGATCATCGGTGTCTGTTGGTAAGCG