- Transcript HORVU7Hr1G115180.13
- Transcript IDHORVU7Hr1G115180.13
- Gene IDHORVU7Hr1G115180
Barley RTD
Exon Structure of HORVU7Hr1G115180.13
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 640933442 | 640933420 | - |
| chr7H | 2 | 640933929 | 640933717 | - |
| chr7H | 3 | 640934346 | 640934059 | - |
| chr7H | 4 | 640934528 | 640934439 | - |
| chr7H | 5 | 640934999 | 640934818 | - |
| chr7H | 6 | 640935723 | 640935126 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g44230.1 | +1 | 0.0 | 716 | 357/460 (78%) | protein|transcription factor X1, putative, expressed |
| TAIR PP10 | AT1G15910 @ ARAPORT AT1G15910.1 @ TAIR |
+1 | 8e-105 | 325 | 175/439 (40%) | Symbols: | XH/XS domain-containing protein | chr1:5465951-5468723 FORWARD LENGTH=634 |
| BRACH PP3 | Bradi2g44460.3.p | +1 | 0.0 | 751 | 379/462 (82%) | pacid=32779768 transcript=Bradi2g44460.3 locus=Bradi2g44460 ID=Bradi2g44460.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1394 bp)
>HORVU7Hr1G115180.13 1394 150831_barley_pseudomolecules CAGCAGATTGTTGTGGAGCCGCAGCCTCTTCCAAACAGACATGAGAAGTTTGTGTGGCCC TGGATGGGTGTTCTAGTTAATGTACCTACTGAATGGAAGGACGGGCGTCAGGTTGGAGAA AGTGGTACTCGTTTGAAGGGGGAGCTGTCGCAATTTTGCCCGCTGAAGGTTATTCCTCTA TGGAATTTCCGAGGCCATACAGGGAATGCTATTGTTGAGTTTGCAAAAGACTGGAATGGT TTCAGAAATGCACTTGCATTTGAACAGTACTTTGAGGCAGGCGGCTGTGGCAGAAGGGAC TGGAAGCAAAACCAGAATCAGGGGTCAAAGCTTTTTGGATGGGTTGCAAGGGCTGAAGAC TACAATCTTTCGGGGCTAATCGGGGACCACTTAAGGAAAAATGCTGACTTGAAAACTATC GATGACCTTGAGAATGAAGGAACACGCAAAAATAATAAACTTGTAGCTAATTTGGCTAAC CAAATTGAGGTCAAGAATAAGTATTTAGAGGAGCTTGAACTTAGATACAATGAGACAACT GCGTCACTTGAGAAGATGATGGGGCAAAGGGAACAACGTCTCCAAGCGTATAATGAAGAA ATTCGGAAGATGCAGCAGCTAGCTCGCAGACATTCTGAAAGAATTATTGATGAGAACCAA AATCTGCGTTCGGAACTGGAGTCCAAGATGAGTGAACTTAATGAAAGATCCAAAGAGCTT GATGACCTTTCTGCAAAAAGTTCTCATGACAGAAGTAATCTTGAGCAGGAGAAGCAGAAG AATGCTATTAAATCAAACCATCTTAAGTTGGCAACAGTGGAACAACAGAGAGCTAATGAG GATGTGGTGAAGCTTGTGAGAGATCAGAAGAGAGAGAAAGTTGCTGCATTAAACAAGATC CTGGAGTTAGAACAGCAGTTGGAGGCAAAACAGACGCTTGAACTGGAAATACAGCAGCTG AAGGGCAAATTGGAAGTGATGAAGCATATGCCAGGTCATGAAGATTCAGAGGCGAAGGAT AAAATCAATCAACTTAGTGAGGAGCTGCAAGATAAGATGGATGAACTGGATGCTATGGAG TCACTTAACCAAACTCTGGTTATTAAAGAAAGCAAAAGCAATACTGAGATGCAAGAAGCT CGGAAGGAGCTGGAAAATGGCTTGCTTAATCTTCCAGGCGGCGGAGCACATATAGGAATT AAGAGAATGGGCGAGCTTGATCTGAAAGCATTTTCAAATGCTCTCGGACAGAAGTTGTCG AAAGAGGAAGCAGAAGTTACTGCTGCCATTCTTTGTTCAAAGTGGGAAGCTGAAATTAGG AATCCAGAATGGCACCCTTTTAGGACTGTCATGGTTGACGGAAAGGAAGTGTCCATCTTA AATGTTGGCTCCTA