Transcript Data
Barley RTD
Links



Exon Structure of HORVU7Hr1G115180.8

ChromosomeExonStartStopDirection
chr7H1640933304640932797-
chr7H2640933941640933717-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os01g44230.1 +1 2e-59 199 100/148 (68%) protein|transcription factor X1, putative, expressed
TAIR PP10 AT4G00380 @ ARAPORT
AT4G00380.1 @ TAIR		 +1 3e-32 124 70/148 (47%) Symbols: | XH/XS domain-containing protein | chr4:167959-170448 FORWARD LENGTH=635
BRACH PP3 Bradi2g44450.1.p +1 3e-74 238 120/148 (81%) pacid=32771749 transcript=Bradi2g44450.1 locus=Bradi2g44450 ID=Bradi2g44450.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (733 bp)

>HORVU7Hr1G115180.8 733 150831_barley_pseudomolecules
CATGTTCCACAGGGCTTGCTTAATCTTCCAGGCGGCGGAGCACATATAGGAATTAAGAGA
ATGGGCGAGCTTGATCTGAAAGCATTTTCAAATGCTCTCGGACAGAAGTTGTCGAAAGAG
GAAGCAGAAGTTACTGCTGCCATTCTTTGTTCAAAGTGGGAAGCTGAAATTAGGAATCCA
GAATGGCACCCTTTTAGGACTGTCATGGTTGACGGAAAGGAAGTGGAGAAAATCGATGCT
GATGACACTAAGCTTCAAGAATTAAAAGATGAGCATGGCCAAGAAATCTATTCGTTGGTG
ACCAAGGCGCTGCGTGAGTACAACGCCAATAGCACCAGGTATCCCGTAGGAGAGCTGTGG
AACTTCAGAGAAGAACGGAAGGCGTCTCTCAAGGAAGCCGTTCAGGTGGTCCTGAGGCAG
TGGCGAACCACCAGGAGGAAGCGTTGATTGAGCCCAACCAATGTCGATTCTTTCCTCCTC
GTATGGACATCGACATTAGCGGTGTGGTTTGATAAAATCTCTAGTGGCTATGTACGCCCA
TGTTGGATATAAGTTGAATAATAAATAATCCTGTTGTTTCAGTAGTAGTAGCATTAGTGA
AGTATCTATCCATCTGTGTAAACAAGCTTGAATAAAGACTTGGAGTAGTATCAGCACCTG
CAAGCACGCTATCAACCCGATCATCGGTGTCTGTTGGTAAGCGCCGCTGTATGCTTTGTT
TCTGAGTTGCTGA