- Transcript HORVU7Hr1G115180.1
- Transcript IDHORVU7Hr1G115180.1
- Gene IDHORVU7Hr1G115180
Barley RTD
Exon Structure of HORVU7Hr1G115180.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 640931065 | 640930729 | - |
| chr7H | 2 | 640936458 | 640931607 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g44230.2 | +1 | 2e-153 | 482 | 245/382 (64%) | protein|transcription factor X1, putative, expressed |
| TAIR PP10 | AT3G48670 @ ARAPORT AT3G48670.2 @ TAIR |
+1 | 5e-57 | 211 | 116/284 (41%) | Symbols: IDN2, RDM12 | XH/XS domain-containing protein | chr3:18031240-18033615 FORWARD LENGTH=647 |
| BRACH PP3 | Bradi2g44450.1.p | +1 | 7e-167 | 521 | 273/382 (71%) | pacid=32771749 transcript=Bradi2g44450.1 locus=Bradi2g44450 ID=Bradi2g44450.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (5189 bp)
>HORVU7Hr1G115180.1 5189 150831_barley_pseudomolecules TTCGAGCAGGAGCAGGTAATCCCAGTCCCCTCCCGAGCTCCACCACCATTCCCCTCCCCC CTCACTCCCGCAGGACCCTAGCCGCCGCCGCCGCCGCCGCCCCCCACCAGCCGGGCTTCT TCTCCTCCTCCCCGACCCCGGGTTCCTTCTCTGCCTCGGCGACCCAAAGGTGAGCATGCG CTGGTGGATGCGTTAGGCAGATCTCCCGAGTAGGCCTCCAACTCACATTTCAGAGACGGC GATTTCTTGCTGTATTCATTCAACACTTGTTGTTGCTTCTTCTCTTAATGGTCTGAACAT GTGATGCCTAAAATCCAGAAGTTCCTGATCTGGTTTCGCCCTCCAAATTCCTTTTGCATA CTCTTACTACTATTCTGTTCTCAGTCACTGTTTCCGGCAGGTTGTCAAAAAAAAAAAAAA TCCTTCTCGGAGATGGAATACAGCTCAGACGACGATTCGGATATCAGCGACTCCGAGATC GACGAGTACGAAGGCAAGATTAACGCCCGTCTGATTTCAGGAGACTTAAAGTTCAGGAAT GGCGATAGCTACGGTTGCCCATTCTGCACTGGCAAGAAGAACAAAGGTTACAACATGCAG AGCCTTCTTCAGCATTCCTCGGGGGTAGGCGCAGCGCCTAATCGGCCGGCAAAAGATAAA GCGTCGCACCGCGCCCTCGCCAAGCATTTGAAGAATGACGTTGCTAAACCTTCTGAGCCA CAGCAACAGCAGCCGCAGCAGATTGTTGTGGAGCCGCAGCCTCTTCCAAACAGACATGAG AAGTTTGTGTGGCCCTGGATGGGTGTTCTAGTTAATGTACCTACTGAATGGAAGGACGGG CGTCAGGTTGGAGAAAGTGGTACTCGTTTGAAGGGGGAGCTGTCGCAATTTTGCCCGCTG AAGGTTATTCCTCTATGGAATTTCCGAGGCCATACAGGGAATGCTATTGTTGAGTTTGCA AAAGACTGGAATGGTTTCAGAAATGCACTTGCATTTGAACAGTACTTTGAGGCAGGCGGC TGTGGCAGAAGGGACTGGAAGCAAAACCAGAATCAGGGGTCAAAGCTTTTTGGATGGGTT GCAAGGGCTGAAGACTACAATCTTTCGGGGCTAATCGGGGACCACTTAAGGAAAAATGCT GACTTGAAAACTATCGATGACCTTGAGAATGAAGGAACACGCAAAAATAATAAACTTGTA GCTAATTTGGCTAACCAAATTGAGGTCAAGAATAAGTATTTAGAGGAGCTTGAACTTAGA TACAATGAGACAACTGCGTCACTTGAGAAGATGATGGGGCAAAGGGAACAACGTCTCCAA GCGTATAATGAAGGTTTGTGTTAATATTTTATAGTCATTTCTTCTATATTGTACATGTGT CAAGATGCATGGTCTTCTGTCATCAGCATCTTTGTGTTTTCAGTTATCATTAATACTCAA TAAAACTTGTTACTACTAGAAATTCGGAAGATGCAGCAGCTAGCTCGCAGACATTCTGAA AGAATTATTGATGAGAACCAAAATCTGCGTTCGGAACTGGAGTCCAAGATGAGTGAACTT AATGAAAGATCCAAAGAGCTTGATGACCTTTCTGCAAAAAGTTCTCATGACAGAAGTAAT CTTGAGCAGGAGAAGCAGAAGGTCTGTGATTTTCTTGGCTCGGCATCTCATCTATTTTGC ATCATCTTTAAACCTTTTGAAGTAGATCCAAGTGGCCCCAGTAACCCCGATATGTAGTGT TGAGCGCTTCGTGGGTGCATCAGACCAATACATATCTGAGTTAACGAAGATCACTCATAA TACTAGTTCATAAGATTATCGGTCTGGCATCATTTTACATACTGTACTAAGGCACTAAAG TGCACAAGATTAGGTCCTGTTGCTTAGAAATATGCGTTCAACTTACTTTTTTTTATTTGC TTGAACTCAGAATGCTATTAAATCAAACCATCTTAAGTTGGCAACAGTGGAACAACAGAG AGCTAATGAGGATGTGGTGAAGCTTGTGAGAGATCAGAAGGTATACTGTCCTTGTTCTTT TTGTGTGATATGATGGTTTGATTTTTTGAACAATATGTCTTGCATCTTAGTCTTACTCTA TGGAAACTGCAGAGAGAGAAAGTTGCTGCATTAAACAAGATCCTGGAGTTAGAACAGCAG TTGGAGGCAAAACAGACGCTTGAACTGGAAATACAGCAGCTGAAGGGCAAATTGGAAGTG ATGAAGCATATGCCAGGTCATGAAGATTCAGAGGCGAAGGATAAAATCAATCAACTTAGT GAGGAGCTGCAAGATAAGATGGATGAACTGGATGCTATGGAGTCACTTAACCAAACTCTG GTTATTAAAGAAAGCAAAAGCAATACTGAGATGCAAGAAGCTCGGAAGGAGCTGGAAAAT GTATATTCATTTTAATTCATTCAAACTGCGATGCGTATAGTGCTCTATGTTGCTTCAGCG ACGTGATCTATCTACCTACTTAATTCTTCAGATCTTGTTTAATCTTCTCATCTACTGCAT GTTCCACAGGGCTTGCTTAATCTTCCAGGCGGCGGAGCACATATAGGAATTAAGAGAATG GGCGAGCTTGATCTGAAAGCATTTTCAAATGCTCTCGGACAGAAGTTGTCGAAAGAGGAA GCAGAAGTTACTGCTGCCATTCTTTGTTCAAAGTGGGAAGCTGAAATTAGGAATCCAGAA TGGCACCCTTTTAGGACTGTCATGGTTGACGGAAAGGAAGTGGTATGAATCTTCATTCGT AAAACTCCACTGCTTGCACATGCCTGAGTAGTTTGCTAGTGTTGAGTTACTAGTGGTACA AAACTTTCCTGACATTTGCTTATACATTTTTGGATTTCTTCTCTTGCAATATTTTGTCAT TGCTTTTTAATGGTTGTGTTTTAGTTGTGTAATTGCTTTAAGTTAGTGCAGTTTGATCAT TTTGGATATCGTTAAACCTCTTGTTCCACTATACTGTGCTAGTTCACAGTAATTCCGTAG CCACGGTAGGGTATGGTCCATCTTAAATGTTGGCTCCTATGCTATCATAATGTGTTATTT ACTAATGGTATCCTGGGAATCATTTTCCTGCAAGTCTCATTACCTGGGTTATCTTGTTTT ACTGTAATAATGATGTGTGAATGCTGCATTTTAGGAGAAAATCGATGCTGATGACACTAA GCTTCAAGAATTAAAAGATGAGCATGGCCAAGAAATCTATTCGTTGGTGACCAAGGCGCT GCGTGAGTACAACGCCAATAGCACCAGGTATCCCGTAGGAGAGCTGTGGAACTTCAGAGA AGAACGGAAGGCGTCTCTCAAGGAAGCCGTTCAGGTGGTCCTGAGGCAGTGGCGAACCAC CAGGAGGAAGCGTTGATTGAGCCCAACCAATGTCGATTCTTTCCTCCTCGTATGGACATC GACATTAGCGGTGTGGTTTGATAAAATCTCTAGTGGCTATGTACGCCCATGTTGGATATA AGTTGAATAATAAATAATCCTGTTGTTTCAGTAGTAGTAGCATTAGTGAAGTATCTATCC ATCTGTGTAAACAAGCTTGAATAAAGACTTGGAGTAGTATCAGCACCTGCAAGCACGCTA TCAACCCGATCATCGGTGTCTGTTGGTAAGCGCCGCTGTATGCTTTGTTTCTGAGTTGCT GATAGTAATTCAGAGGAGTGTTTGTTTGTTGCCTGAATTAATGGTGACCTCCTGTACCAA GTATAGATACAGGAATGCATGAATTAGCACATCCACCTAAATACAATGATGCAAGTTACT GTGAGGCAACATTGATCTCCAATGAATAGAGAGGTACTATTTGAGAGTAAAAAAAAATCA TTCTATGCCAAGGGGAAAAGGTACGGGGTAACATTTGTAAAAGATGGATTACCTCCCTAT TACATCACCAGCCATATTAATCTGAAAGCGTAGACATCTCATTCAGCATCTCAAATAATG TTGGGAGTACACAAGCAGGTAAGCAACTTGTAATACCTGAAGATAAACAATATTAAAGTA GCTGTTTGCCTTCACTAACAGCTACTGATTCAAACCTCAGTCAACATATGTATTTTGGGT TTGGATAAAGTTAATACTAGTTCAACAACCTTTATACGAATAAAATTGGCAACAGAGGAC CCCCAAAGAATAGTTGCTTTGTTGCATCTATATCCATATGGACCAATATCATCCGCACAG GATGCACAACTACAACAGCTGAATATTGACAAAGTTATACAGCTACTTTTTTTACAACAA TAGGCCGAATAGTTACAGCGGGCCCTCGATGACTAACCTACAGCTAGTGTACACTCCGAC TCCCGATGCCTGGTAGCAACAACCAGGCAAAACAGCTGGGACTGGGATCACATGTGCCTC CATGCGATCGCCGGAACCTAAACCACATGTACAGGTGCGCTTTCCCCAACCTCGCTACCG ATCAGCAGGTACAGCAATCTATGTTAGGACACGGCGTCGCCATATCTTTGTTATTGTGCT AGCTCTCCATTGCGCTCTCGGCGTCGTCAAGCACGTCTGCGCTTTCATCAAGAAGGTGGT CGCACAGCTCCAGGAGCTCGTCGGCCAGTGGAGGGATGTGAGGATGCCGCGTCTCGTTGT ACATGTGCGCATTGTCTGCTATCTGCGCCACGTCATTCCTGAATTCGTACCTGTTTTTGT ACTCCATCTTCCTCGCCTTGTCCCTGATGGTACCCAGATCCATTGGGCGCTGGATTACAT CGTAGTAATCGGGAGCGACTTTCTTTGTCACTGGTTTAAGAAACAGCAATGATATAGCAG TTTGGTTCCGCAAGTGGTCAACTATCTTCTCCAATATGTTGGAGAGCTCAACCTCTCCTC CTCTGCGCCGCTTGGCTGATGGAGCATATTCTGTCATATCAGCTGGAGTACGTCTCTTTG ATGCTCGATCTCTTTCAGGTACCTTTCTGTCATTTCTGTATGGCCTGTGATCAAGAATGT CAGCATCTCGAAATTCATGTTTTTTCTTTTTCTTGCTTTTTTTCTTTGCCTTCTGGAGCT CTTCCTCCCTGCTATAAATCCTAGCTTCAATTAGCCTCTGTTCCTGTCTCTCTCGCATCT CTTTAAAAGCTCTCCAGGATTCATCACCTCCCGTTACTTCTTTGCTTTTCCTGTTACCAT CCCGGCCTAACCTATCATGTGAAGAATTC