Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU7Hr1G115180	99.3	-	-	4951	837	Partial-Overlap

Transcripts from Gene BART1_0-u56729

Transcript	Length(bp)	Description
BART1_0-u56729.001	3709	3709 bp MSTRG.56729.1 MSTRG.56729
BART1_0-u56729.002	3723	3723 bp MSTRG.56729.2 MSTRG.56729
BART1_0-u56729.003	1514	1514 bp MSTRG.56729.3 MSTRG.56729

Exon Structure of BART1_0-u56729

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os01g44230.1	+2	0.0	874	446/614 (73%)	protein|transcription factor X1, putative, expressed
TAIR PP10	AT3G48670 @ ARAPORT AT3G48670.2 @ TAIR	+2	2e-135	427	245/621 (39%)	Symbols: IDN2, RDM12 | XH/XS domain-containing protein | chr3:18031240-18033615 FORWARD LENGTH=647
BRACH PP3	Bradi2g44450.2.p	+2	0.0	952	496/614 (81%)	pacid=32771748 transcript=Bradi2g44450.2 locus=Bradi2g44450 ID=Bradi2g44450.2.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0005524	ATP binding
GO:0009507	chloroplast
GO:0006091	generation of precursor metabolites and energy
GO:0005978	glycogen biosynthetic process
GO:0005507	copper ion binding
GO:0019252	starch biosynthetic process
GO:0016491	oxidoreductase activity
GO:0031047	gene silencing by RNA
GO:0055114	oxidation-reduction process
GO:0008878	glucose-1-phosphate adenylyltransferase activity

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons