Gene Data
Barley RTD
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Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u5523293.9++4280-277Containing




Transcripts from Gene HORVU7Hr1G096640

TranscriptLength(bp)Description
HORVU7Hr1G096640.13407gene=HORVU7Hr1G096640 CDS=377-3058
HORVU7Hr1G096640.23425gene=HORVU7Hr1G096640 CDS=395-3076
HORVU7Hr1G096640.33431gene=HORVU7Hr1G096640 CDS=401-3082
HORVU7Hr1G096640.43413gene=HORVU7Hr1G096640 CDS=383-3064
HORVU7Hr1G096640.52997gene=HORVU7Hr1G096640 CDS=283-2964
HORVU7Hr1G096640.63455gene=HORVU7Hr1G096640 CDS=301-2982
HORVU7Hr1G096640.73426gene=HORVU7Hr1G096640 CDS=394-3075
HORVU7Hr1G096640.83537gene=HORVU7Hr1G096640 CDS=391-3072
HORVU7Hr1G096640.93442gene=HORVU7Hr1G096640 CDS=976-2955
HORVU7Hr1G096640.103441gene=HORVU7Hr1G096640 CDS=273-2954
HORVU7Hr1G096640.113265gene=HORVU7Hr1G096640 CDS=263-2944
HORVU7Hr1G096640.123304gene=HORVU7Hr1G096640 CDS=1434-2957
HORVU7Hr1G096640.132698gene=HORVU7Hr1G096640 CDS=257-2542
HORVU7Hr1G096640.144142gene=HORVU7Hr1G096640 CDS=1643-3655
HORVU7Hr1G096640.152937gene=HORVU7Hr1G096640 CDS=183-2864
HORVU7Hr1G096640.161974gene=HORVU7Hr1G096640 CDS=1-1974



Exon Structure of HORVU7Hr1G096640


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os08g28460.1 +2 3e-170 527 322/693 (46%) protein|NBS-LRR disease resistance protein, putative, expressed
TAIR PP10 AT3G07040 @ ARAPORT
AT3G07040.1 @ TAIR		 +2 3e-39 159 166/603 (28%) Symbols: RPM1, RPS3 | NB-ARC domain-containing disease resistance protein | chr3:2226244-2229024 REVERSE LENGTH=926
BRACH PP3 Bradi3g34697.5.p +2 0.0 978 498/647 (77%) pacid=32815100 transcript=Bradi3g34697.5 locus=Bradi3g34697 ID=Bradi3g34697.5.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons