- Transcript HORVU7Hr1G096640.9
- Transcript IDHORVU7Hr1G096640.9
- Gene IDHORVU7Hr1G096640
Barley RTD
Exon Structure of HORVU7Hr1G096640.9
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 588696465 | 588696303 | + |
| chr7H | 2 | 588697444 | 588696583 | + |
| chr7H | 3 | 588700478 | 588698062 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g28460.1 | +1 | 3e-172 | 526 | 321/686 (47%) | protein|NBS-LRR disease resistance protein, putative, expressed |
| TAIR PP10 | AT3G50950 @ ARAPORT AT3G50950.1 @ TAIR |
+1 | 1e-44 | 145 | 158/523 (30%) | Symbols: ZAR1 | HOPZ-ACTIVATED RESISTANCE 1 | chr3:18936127-18938685 FORWARD LENGTH=852 |
| BRACH PP3 | Bradi3g34697.5.p | +1 | 0.0 | 976 | 498/648 (77%) | pacid=32815100 transcript=Bradi3g34697.5 locus=Bradi3g34697 ID=Bradi3g34697.5.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3442 bp)
>HORVU7Hr1G096640.9 3442 150831_barley_pseudomolecules TCCCCATCCCTACCCTACCACCGGAGCAGCCAAGAAAGAAATCTGGCCGCAATCGTTTGG GGTGAACACGGCGGAGCTCCTCGTCTCCAAATCCCTACACCCCTTGAGTCGTTCATCTGC GGAATCATCCTTGCTTCTCTTGAGGTTCATGGCAAGGATCAAGTCCGATTAGCATCTCGT GCAAATTCATTCCAGTCCTGTTAGTCCTTGACGCGAACCAAGCTGACCGAAGCCCCGGCT TCCGAGCCTCGCCCTCGTTACGGCTGGCTGAGATGGAGCCCGTGAGCGCGGCCACGGGGG CCATGGGGTCCGTCCTGGGGAAGCTGGGCGCCCTGTTTGCCGACGGCCACGAGGTTTCCA ACGGCGACGTCGAGTCCCTCAAGGCGGAGCTCCAGGCGGTGCACGCCTTCCTCAAGGCAA CATCCCAGGCCGAGGACCCCGGCGAGCGAGGCAGGCGCTGGATGAAGGAGGCGCGGGAGT TGTCGTACGACGTGGAGGACGCGCTAGACAAGTTCATGCTCCATTCCCGCGACGGATCTG GTGCTGCTGATAACGACTCGGACGGTTTCTCTGAAAAGATGAGCGCCTGGTTGTCGGAGG CGGCGGCTCGCCGTCGGACAGGCCAGGAGATCAGCGATGCCATCTCCAGGGCCGGCGGCG CCGAGGCGGAGGATCCCCGCCGGGACTGCTCTCTCTACAGAGAGACGGGTGAACCCGTGG GCGTCGACGGGCCGGCTGCTCAACTCATCAGAATGGTGGACGGAGGAGGGAAGCAATTGG ATCTGGAGGTGGTTTCCATGGTCGGGTGTGGGGGGCTGGGCAAGACGACTCTTGCTCGTC GCGTCTACGACACAATGGGTCAGCAGTTCGAGTGTCGGGCTTTCGTCTCCGTCTCCCGGA GACCTCATGTGGTTGCAATTTTGAGCGACATTCGGAGCCAACTGGGGTATGAGTATGCCC AAAGCTTAACTGAGGATGCAAAATCGCTCCTTGACAGCATCTCCAATTTCCTTCAGGATA AAAGGGTACTTCATCATAGTAGATGATGTATGGGACGTTCAAACATGGGATATTCTCAAG GGTGCCTTTCCAAAAGGCAATTTTGGTAGCAGAATAATCACAACAACGCGGATACATGAG GTAGCCAAATCATGCTGTGCTTCATGTGGGGGGCGAGTTTATACAGTAAGCCCTCTCAGT GCCATCGATTCGGAAAGGTTGTTTTTTAAGTTGGTGTTCAATTCTGGTGAGCAATGCCCA TCCCACCTGAAAAGAGTTTCTGACAAGATCTTGCAAAAATGTGGTGGTCTGCCGCTGGCA ATTATTGCTATATCCGGTTTGCTGATTGCCAATACGCATGAAGATCAGTGGGAGCAAGTG TACAGTTCTATCAGGCATGGACTTGGAAGCAACCCTGCCGTCGAAAGAACCATGAGGATT TTGTTGCTTGGCTACTTTGATCTTACTCCTTGCCTGAAATCTTGCCTGCTTTATCTCAGT GTATTCCCGGAAGGCTGTGCTGTCAAGAAGGAACGTCTGGTAATGAGATGGATTGCCGAG GGGTTCATTCCTGAAGAGCATGGGCACACCCTTTATGAATCAGGAGAGAGGTGTTTTAAC GAGCTCATCGACCGGAACCTGATCCAACCAGGGGAGATAAATAAGTTTGGGGAGGTGGAA AGCTGTCGAGTCCATGGTATAATTTTTGATTTCCTTGTATCCATGTCAAACCAAGACAAT TTTGTTACTTTATTGGGTGTACCTGGTGTAAACCCTGAGCCAGGAAACAAAGTCCGTCGA TTGTCTCTACAGGGTGACAGTGAGATTCCAGCAGATCTTATTTTGTGTAAAGCCCGGTCA CTTTCTGTTTTTGGTCATTGTGTTAAAATGCCATCGCTCTGGAAGTCCAGACACTTGCAT ATTTTAGATTTGGTTTGTTCTGGGAAAGTAGAAGATCAACATCTTGCAGAAATAGGTGGT CTGTTCCATCTTAAGTACCTGAGGCTCAAGTCAAAAGTTGGAAAGCTTCCCCAGCAAATA GCAGAGTTACAGTCCTTGGAGTCACTCGAGATATGTGAAAGCAACGCGACAACTGAGATT CCACCAGCCATCAATCAACTTACACGGTTGGTACGTCTAGTTGTTCACGACGAAACTATA TTACCGGATGAAATCGGTGGCCTCAAAGCATTGCAAGTGTTGAGAGGTATCAATGTCAAC ACCCAGTCAACCAACTTTGTTCGGCAACTTTGCCTACTATCAAACCTGAGGGAACTAAGC ACAAGTTTTATCAACTATTATGCGGGTGATAACTGGAAGGAGAATCAGGAAGAGATGGTC AATTCGATTTGTAGGCTAGGCAAAGCAAATCTTCATGTTCTACATATTACTATCAATGAG GGAGCAGATGAGATCTTTGAGGAATCATGGTGCCCTGCTCCACTTAGTCTCCGAGAACTC GTTGTCGAGGTGGGCGTAGTCTCGACTGTTCCGAGATGGATTGGCTCACTTGTCAACCTC CAGAGATTAGCCGTGCTTATGTGGGAAGTTGGGGAGGAGGATGTGGTGATCCTGGGAAGC CTACCTGATCTGCGCCATCTTAGCCTCACTGCACTGGCAGCTGGGTCAAAAGAAGGGCGG CTTAGAGTCGCCCAAAGCCATGGATTCCCTTCCTTGATCAGTTTCCAGATCGGCGGAGAA GAGTGTGCACTGGGGTTAGTTTTTGAAGCTGGTTCCATGCCGAAGCTACAAAATCTTGAG CTTGAGTTCGACGCAGAGGAAACTAGTTCTGTGACTGATGGTGAGTTTGATTTTGGCATC AAGCACCTCCCCTGCCTGACAAGCACATCAGTTCGCTCTACTTGCGACGAATCCATTCGT CCAACATTGGAGGCCGCCATGGAGAGATGCATCAAGGACCATCCCAACCATCCCACGTTG ATATGGACGAAATGAACATTTGTAAGACACTGATTGCCCTTTCTAAAGAGTTGCCACTTA AGAGTATGTATATGTAATTTATTTTTTCTATGTATCCTCTCACAACATCTCTTTCCATAT GTTTTTTTTCCTACCTCTTTCAGGGAAAAAATCAAGCAGGCTGATAGAAGCTGCAGTTAG AATGAGCAAGAAGATGGGTGAACATGATTTGTAGGGTGACAGTGGAAAGCCAAGATGGGA GCAATATTGGTCCGAATTTTTTTTTTGATTGAATATCCGACTGAAGTTCTTGTTACATTC AGTCAGTGGTATTCTATGTATCCAAAAGTCAAATGAGGGCGTGTTCCTATTTTTCCTGAA ATGTTTCAGACACGAGCAATCAGCGTGGTGGAACGCATGACTGATGGCTATCATTTTCTT TTTGTTCCTTCGTTGTTTTTTCGTTGAAGTGAGCAAGTGACATTTTTTAATTTTCTCAAG TACTCCCTCTGTCATGATCTAC